Miyakogusa Predicted Gene

Lj4g3v2819900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2819900.1 Non Characterized Hit- tr|D8RHF6|D8RHF6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,58.33,2e-16,seg,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; no description,NULL; SUBFAMILY NOT NAMED,N,CUFF.51698.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g091290.1 | ribonuclease H superfamily polynucleotidyl tra...   469   e-133
Medtr4g108870.1 | ribonuclease H superfamily polynucleotidyl tra...   283   1e-76

>Medtr8g091290.1 | ribonuclease H superfamily polynucleotidyl
           transferase | HC | chr8:38101660-38099823 | 20130731
          Length = 281

 Score =  469 bits (1208), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/268 (83%), Positives = 245/268 (91%), Gaps = 3/268 (1%)

Query: 1   MMEFSNSCNEQQQAPEIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIR 60
           M E SNSCN +  APEIVFFDLET VP+K+GQRF VLEFGA+VV  HKLSEIES+TTLIR
Sbjct: 1   MEEVSNSCNNELHAPEIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIR 60

Query: 61  PKDLTVVSVKSSRLEGITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREA 120
           P+DL+V  +KSSR +GITREAVKNAP FEDVA++IFSILNGRVWAGHNIQRFDCVRI+EA
Sbjct: 61  PEDLSVAPMKSSRSDGITREAVKNAPCFEDVAEKIFSILNGRVWAGHNIQRFDCVRIKEA 120

Query: 121 FDAINRPPPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 180
           FD INRP PVPVG+IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV
Sbjct: 121 FDGINRPAPVPVGIIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 180

Query: 181 LKNCATVLFLESSLPNTLH---SKWHGSSSVMTRSRTNGKSPCKEETSRKSPPTSLAFQR 237
           +K+CATVLFLES+LPNTLH   SKW+GSSS+MTRSRTNGKSPC+EETSRKSPP S ++QR
Sbjct: 181 VKHCATVLFLESTLPNTLHIDKSKWYGSSSIMTRSRTNGKSPCREETSRKSPPASSSYQR 240

Query: 238 TVPYTRGSLTKVTERVKGLLCKAQGQPP 265
           TVPY RGSL KV ER+KGLLCKAQGQPP
Sbjct: 241 TVPYARGSLGKVAERMKGLLCKAQGQPP 268


>Medtr4g108870.1 | ribonuclease H superfamily polynucleotidyl
           transferase | HC | chr4:45122732-45125978 | 20130731
          Length = 492

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/233 (59%), Positives = 173/233 (74%), Gaps = 10/233 (4%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EIVFFD+ETTVP + GQ F +LEFGA++V P KL+E+ +++TL+RP +L++++  S R  
Sbjct: 12  EIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSELSLITPLSERCN 71

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GI  EAV NAP+F D+A  ++ +L+GR+WAGHNI RFDCVRIR+AF AI +PPP P G+I
Sbjct: 72  GINAEAVSNAPTFVDIAHSVYDLLHGRIWAGHNIIRFDCVRIRDAFAAIKQPPPEPKGLI 131

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSL +LT+KFGRRAGNMKMATLA+YFGLGQQ HRSLDDVRMNLEVLK CATVLFLESSLP
Sbjct: 132 DSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 191

Query: 196 NTLHSKWHGSSSVMTRSRTNGK----------SPCKEETSRKSPPTSLAFQRT 238
           +        S + +TRSR+NGK          SP  E   +  P  SLA   T
Sbjct: 192 DIFTENCWVSPNAVTRSRSNGKSRPEGGLLVSSPETETQDKNHPILSLATSST 244