Miyakogusa Predicted Gene
- Lj4g3v2802770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2802770.1 Non Characterized Hit- tr|I1KT70|I1KT70_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.78,0,CTD_bind,RNA
polymerase II-binding domain; SUBFAMILY NOT NAMED,NULL;
CYCLIN-DEPENDENT KINASE INHIBIT,CUFF.51674.1
(370 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g087840.1 | ENTH/VHS family protein | HC | chr3:39807660-3... 446 e-125
Medtr7g026740.1 | regulation of nuclear pre-mRNA domain protein ... 256 2e-68
Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC ... 250 2e-66
Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC ... 250 2e-66
Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC ... 245 6e-65
Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC ... 122 4e-28
>Medtr3g087840.1 | ENTH/VHS family protein | HC |
chr3:39807660-39811898 | 20130731
Length = 533
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/375 (63%), Positives = 280/375 (74%), Gaps = 13/375 (3%)
Query: 1 MSVTSTFNEQILADKMSKINSTQQCVETLSHWCIFHQSKAELVVGTWDKQFHNSEKGKRV 60
MS + F E ILADK++K+NSTQQC+ETLSHWCIFH+S AE VV TW QF S+ R+
Sbjct: 1 MSTKNQFKEAILADKLAKLNSTQQCIETLSHWCIFHRSNAEQVVATWKNQFDKSDMIHRI 60
Query: 61 PLLYLANDILQNSKRKGNEFVTEFWKVLPNSLKDVLDKGEDHEKRVASRLVDIWEERKVF 120
PLL+LANDILQNSKR G EFV EFWKVLP +LKDV+ K +D KR SRL ++WE+R VF
Sbjct: 61 PLLWLANDILQNSKRNGKEFVIEFWKVLPAALKDVIAKDDDRGKRAVSRLFEVWEQRNVF 120
Query: 121 GSMAQNLKNVILGVEAPPPLEFNKKRSRTG------SVRIVKKDSRSIRTKLTIGGPAEK 174
GS NLK+ +LG +PPPLEF KKR R+ SV+I+K+DSRSI++KL+IGG EK
Sbjct: 121 GSRVPNLKDAMLGEGSPPPLEFGKKRPRSARIMKRDSVKILKRDSRSIKSKLSIGGTTEK 180
Query: 175 IVSAFHAVLSEHPNEDAEMSKCKSSVHRVRKMEKDVDIACNIVKDPKRKTLAKELVEEES 234
IVSAFH VL E NEDAEMSKCKS+V RVRK+EKDVDIAC KDP RKTL KEL E++S
Sbjct: 181 IVSAFHLVLGEQANEDAEMSKCKSAVQRVRKIEKDVDIACATAKDPTRKTLRKELEEQQS 240
Query: 235 IMKRCIENLKLVEASRAALVSQLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRLEN 294
++K CIE LKLVE +R ALVSQLKEALHEQES+LENVRTQ+QVAQAQ EE+S M+KRL+N
Sbjct: 241 LLKHCIEKLKLVEENRVALVSQLKEALHEQESDLENVRTQMQVAQAQIEEASNMQKRLDN 300
Query: 295 EEISYKPSSSTTSVIDXXXXXXXXXXXXXXXXXXEVADKLAASSSSQFIMTSVLETFAAE 354
E+ S S T+ EVADKL ASSSSQ IM+SVL TFAAE
Sbjct: 301 EDSSQNASIKTS-------QSEAATKKSAAAIAAEVADKLTASSSSQLIMSSVLSTFAAE 353
Query: 355 EAKNAGLASESMSKP 369
EAK+ GL SES SKP
Sbjct: 354 EAKSVGLTSESTSKP 368
>Medtr7g026740.1 | regulation of nuclear pre-mRNA domain protein |
HC | chr7:8884185-8894171 | 20130731
Length = 527
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 192/292 (65%), Gaps = 5/292 (1%)
Query: 3 VTSTFNEQILADKMSKINSTQQCVETLSHWCIFHQSKAELVVGTWDKQFHNSEKGKRVPL 62
+ STFN QIL +K++K+NS+Q +ETLSHWCIFH +KA+ VV TW KQFH+S + K++
Sbjct: 1 MGSTFNPQILVEKLAKLNSSQTSIETLSHWCIFHMNKAKQVVETWAKQFHSSPREKKLAF 60
Query: 63 LYLANDILQNSKRKGNEFVTEFWKVLPNSLKDVLDKGEDHEKRVASRLVDIWEERKVFGS 122
L+LANDILQNS+RKG+EFV EFWKVLP+SL+DV+ G+D+ + A RL+ IW+ERKVFGS
Sbjct: 61 LFLANDILQNSRRKGSEFVGEFWKVLPDSLRDVIQNGDDNARNQARRLIGIWDERKVFGS 120
Query: 123 MAQNLKNVILGVEAPPPLEFNKKRSRTGSVRIVKKDSRSIRTKLTIGGPAEKIVSAFHAV 182
Q LK +G A E N + + + + +++ + + G ++IVS + +
Sbjct: 121 RGQILKEEFVGRHA----ENNNRDVKPMNAKPTNVKPMNVKLRPSAGNALDRIVSGYQYI 176
Query: 183 LSEHPNEDAEMSKCKSSVHRVRKMEKDVDIACNIVKDPKRKTLAKELVEEESIMKRCIEN 242
+EDA +SKC++++ + K++K++D N K + EL I+K CI+
Sbjct: 177 YGGQTDEDAVLSKCQNAISSLEKVDKEIDHDSNSGKF-HGPAVVNELQGHNGILKDCIDQ 235
Query: 243 LKLVEASRAALVSQLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRLEN 294
L +E+SRA+LVS L+EAL +QE +L VR+QIQ A+ Q E S+ ++L N
Sbjct: 236 LTAIESSRASLVSHLREALQDQEFKLGQVRSQIQAARVQWEHSNNTCQQLLN 287
>Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC |
chr6:9201234-9212785 | 20130731
Length = 542
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 225/373 (60%), Gaps = 27/373 (7%)
Query: 7 FNEQILADKMSKINSTQQCVETLSHWCIFHQSKAELVVGTWDKQFHNSEKGKRVPLLYLA 66
++ Q+LA+K+ K+N++QQ +E++S C+ H+ +A+ +V TW+K F +S+K +RVP L LA
Sbjct: 6 YDGQVLAEKLRKLNNSQQSIESVSRLCVSHRKRAKDIVETWNKSFGSSQKEQRVPFLNLA 65
Query: 67 NDILQNSKRKGNEFVTEFWKVLPNSLKDVLDKGEDHEKRVASRLVDIWEERKVFGSMAQN 126
NDILQNS+RKG+EFV EFWKVLP++LK V E +K V RL+DIWEERKVFGS +Q
Sbjct: 66 NDILQNSRRKGSEFVNEFWKVLPSALKRVYASDEPGKKSVI-RLIDIWEERKVFGSRSQG 124
Query: 127 LKNVILGVEAPPPLEFNKKRSRTGSVRIVKKDSRSIRTKLTIGGPAEKIVSAFHAVLSEH 186
LK I G + N K S ++I K+D+ S+R KL IG EKI++A H V EH
Sbjct: 125 LKEEITG-------KSNGKNSNP--IKIAKRDAHSLRLKLAIGCLPEKIITALHFVNEEH 175
Query: 187 PNEDAEMSKCKSSVHRVRKMEKDVDIACNIVKDPKRKTLAKELVEEESIMKRCIENLKLV 246
PNE+A ++KC +++ ++ K+ +DV+ + P TL +L ++E + + I L+
Sbjct: 176 PNEEASLNKCSAALSQLGKLVEDVENTLSQGNQPG-STLVNDLQQQEKELTQNIVQLENT 234
Query: 247 EASRAALVSQLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRL-ENEEISYKPSSST 305
EA RA L+SQLKEAL EQES E V +++Q A+ E+ + +RKR + E + P +T
Sbjct: 235 EAIRATLLSQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRVPEQTT 294
Query: 306 TSV-IDXXXXXXXXXXXXXXXXXXEVAD------------KLAASSSSQFIMTSVLETFA 352
SV ++ + + +L AS+SS ++TS+L +
Sbjct: 295 PSVQLNSTPPPPSFTQPTMSFAPLQTTEDDKKAAAAAVAARLTASTSSALMLTSILSSLV 354
Query: 353 AEEA--KNAGLAS 363
AEEA KN L S
Sbjct: 355 AEEAASKNGSLNS 367
>Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC |
chr6:9202019-9212786 | 20130731
Length = 542
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 225/373 (60%), Gaps = 27/373 (7%)
Query: 7 FNEQILADKMSKINSTQQCVETLSHWCIFHQSKAELVVGTWDKQFHNSEKGKRVPLLYLA 66
++ Q+LA+K+ K+N++QQ +E++S C+ H+ +A+ +V TW+K F +S+K +RVP L LA
Sbjct: 6 YDGQVLAEKLRKLNNSQQSIESVSRLCVSHRKRAKDIVETWNKSFGSSQKEQRVPFLNLA 65
Query: 67 NDILQNSKRKGNEFVTEFWKVLPNSLKDVLDKGEDHEKRVASRLVDIWEERKVFGSMAQN 126
NDILQNS+RKG+EFV EFWKVLP++LK V E +K V RL+DIWEERKVFGS +Q
Sbjct: 66 NDILQNSRRKGSEFVNEFWKVLPSALKRVYASDEPGKKSVI-RLIDIWEERKVFGSRSQG 124
Query: 127 LKNVILGVEAPPPLEFNKKRSRTGSVRIVKKDSRSIRTKLTIGGPAEKIVSAFHAVLSEH 186
LK I G + N K S ++I K+D+ S+R KL IG EKI++A H V EH
Sbjct: 125 LKEEITG-------KSNGKNSNP--IKIAKRDAHSLRLKLAIGCLPEKIITALHFVNEEH 175
Query: 187 PNEDAEMSKCKSSVHRVRKMEKDVDIACNIVKDPKRKTLAKELVEEESIMKRCIENLKLV 246
PNE+A ++KC +++ ++ K+ +DV+ + P TL +L ++E + + I L+
Sbjct: 176 PNEEASLNKCSAALSQLGKLVEDVENTLSQGNQPG-STLVNDLQQQEKELTQNIVQLENT 234
Query: 247 EASRAALVSQLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRL-ENEEISYKPSSST 305
EA RA L+SQLKEAL EQES E V +++Q A+ E+ + +RKR + E + P +T
Sbjct: 235 EAIRATLLSQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRVPEQTT 294
Query: 306 TSV-IDXXXXXXXXXXXXXXXXXXEVAD------------KLAASSSSQFIMTSVLETFA 352
SV ++ + + +L AS+SS ++TS+L +
Sbjct: 295 PSVQLNSTPPPPSFTQPTMSFAPLQTTEDDKKAAAAAVAARLTASTSSALMLTSILSSLV 354
Query: 353 AEEA--KNAGLAS 363
AEEA KN L S
Sbjct: 355 AEEAASKNGSLNS 367
>Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC |
chr7:34034205-34026117 | 20130731
Length = 489
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 208/345 (60%), Gaps = 15/345 (4%)
Query: 29 LSHWCIFHQSKAELVVGTWDKQFHNSEKGKRVPLLYLANDILQNSKRKGNEFVTEFWKVL 88
LS WCI HQ +A+ +V WDK F+ S+K +RV L LANDILQNS+RKG+EFV EFWKVL
Sbjct: 10 LSRWCIPHQKRAKDIVEIWDKLFNASQKEQRVSFLNLANDILQNSRRKGSEFVNEFWKVL 69
Query: 89 PNSLKDVLDKGEDHEKRVASRLVDIWEERKVFGSMAQNLKNVILGVEAPPPLEFNKKRSR 148
P +L+ V + G+ ++ +RL+DIWEERKVFGS +Q LK+ ++ + P P N +
Sbjct: 70 PAALRHVYESGDVQGRKAVNRLIDIWEERKVFGSRSQGLKDEVMS-KNPLPFSANNGKG- 127
Query: 149 TGSVRIVKKDSRSIRTKLTIGGPAEKIVSAFHAVLSEHPNEDAEMSKCKSSVHRVRKMEK 208
+ ++IVK+D+ S+R KL +G EKI++AFH+VL EH NE+A ++KC + VH V K+ +
Sbjct: 128 SDPIKIVKRDAHSVRIKLAVGSLPEKILTAFHSVLDEHLNEEAALNKCNAGVHDVVKLLE 187
Query: 209 DVDIACNIVKDPKR--KTLAKELVEEESIMKRCIENLKLVEASRAALVSQLKEALHEQES 266
DV+ N + TL L E E +K +E L+ EA+RA+L+SQLK+AL E ES
Sbjct: 188 DVE---NTFAQGNQLGSTLVNNLQEREKELKHYMEQLEHAEAARASLLSQLKDALQEHES 244
Query: 267 ELENVRTQIQVAQAQAEESSFMRKRLENEEISYKPSSSTTSVIDXXXXXXXXXXXXXXXX 326
+ E+VR Q+ + + Q E+++ +RK L + PS
Sbjct: 245 KQEHVRAQLLIVRGQIEKTAGIRKWLNQTTEATHPSVQLNGTTSQPTCAQPSMSFSPFQT 304
Query: 327 XXE--------VADKLAASSSSQFIMTSVLETFAAEEAKNAGLAS 363
E VA KLA SSSS ++ SVL + AAEEA + G +S
Sbjct: 305 SEEDNKKAAAAVAAKLAGSSSSAQMLASVLSSLAAEEAASKGFSS 349
>Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC |
chr7:34032142-34026117 | 20130731
Length = 377
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 14/236 (5%)
Query: 139 PLEFNKKRSR-TGSVRIVKKDSRSIRTKLTIGGPAEKIVSAFHAVLSEHPNEDAEMSKCK 197
PL F+ + + ++IVK+D+ S+R KL +G EKI++AFH+VL EH NE+A ++KC
Sbjct: 5 PLPFSANNGKGSDPIKIVKRDAHSVRIKLAVGSLPEKILTAFHSVLDEHLNEEAALNKCN 64
Query: 198 SSVHRVRKMEKDVDIACNIVKDPKR--KTLAKELVEEESIMKRCIENLKLVEASRAALVS 255
+ VH V K+ +DV+ N + TL L E E +K +E L+ EA+RA+L+S
Sbjct: 65 AGVHDVVKLLEDVE---NTFAQGNQLGSTLVNNLQEREKELKHYMEQLEHAEAARASLLS 121
Query: 256 QLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRLENEEISYKPSSSTTSVIDXXXXX 315
QLK+AL E ES+ E+VR Q+ + + Q E+++ +RK L + PS
Sbjct: 122 QLKDALQEHESKQEHVRAQLLIVRGQIEKTAGIRKWLNQTTEATHPSVQLNGTTSQPTCA 181
Query: 316 XXXXXXXXXXXXXE--------VADKLAASSSSQFIMTSVLETFAAEEAKNAGLAS 363
E VA KLA SSSS ++ SVL + AAEEA + G +S
Sbjct: 182 QPSMSFSPFQTSEEDNKKAAAAVAAKLAGSSSSAQMLASVLSSLAAEEAASKGFSS 237