Miyakogusa Predicted Gene

Lj4g3v2800430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2800430.1 Non Characterized Hit- tr|G7LB95|G7LB95_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,61.73,3e-18,
,CUFF.51653.1
         (80 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g091700.1 | transmembrane protein, putative | LC | chr8:38...    99   8e-22
Medtr3g094730.1 | transmembrane protein, putative | HC | chr3:43...    61   3e-10

>Medtr8g091700.1 | transmembrane protein, putative | LC |
          chr8:38264209-38264744 | 20130731
          Length = 78

 Score = 99.0 bits (245), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 1  MRLFIPALFLFLVFTFNVMIHVVQGGRSFINKE-VVATGSSAPTRRGNCEKQKGGCKERS 59
          MR FIP +FLFL+FTFNV   V +G  SFINK+ V+A+GSSA  R   C+KQ G CK ++
Sbjct: 1  MRFFIPVMFLFLLFTFNVTFAVQKG--SFINKDAVLASGSSATVRSAGCDKQSGECKRKT 58

Query: 60 GGLEESVMFEHEDYVYTNSLP 80
          GG EE+V FE+EDYVYTNSLP
Sbjct: 59 GGSEETV-FENEDYVYTNSLP 78


>Medtr3g094730.1 | transmembrane protein, putative | HC |
          chr3:43221273-43222184 | 20130731
          Length = 82

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 1  MRLFIPALFLFLVFTFNVMIHVVQGGRSFINKEVVATGSSAPT----RRGNCEKQKGGCK 56
          MRL  P L LF+ F F V   VVQ   + IN+ VV  GS + +    RRG CEKQ   CK
Sbjct: 1  MRLSKPTLILFVFFIFTVTC-VVQM-EAVINERVVDAGSGSSSVNVVRRGECEKQGVECK 58

Query: 57 ERSGGLEESVMFEHEDYVYTNSL 79
          + +GG E++ + E EDY+YTNS+
Sbjct: 59 QVNGGNEDNDL-ESEDYIYTNSV 80