Miyakogusa Predicted Gene

Lj4g3v2788040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2788040.1 tr|B9H5K5|B9H5K5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_760199 PE=4
SV=1,39.31,5e-19,seg,NULL,CUFF.51638.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g091950.1 | hypothetical protein | HC | chr8:38366940-3836...   174   3e-44
Medtr4g005500.1 | transmembrane protein, putative | HC | chr4:29...    51   4e-07

>Medtr8g091950.1 | hypothetical protein | HC |
           chr8:38366940-38365917 | 20130731
          Length = 140

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 102/120 (85%), Gaps = 3/120 (2%)

Query: 33  DEGGQNVAQDQDHPEKPLLSKVLLDTISLLRKSHKSSWEKIKTVIHDLQMQFSPPNLDFR 92
           DEGGQNVA D   PEKP L+K+L+DT+SLLRKSH+SSWEKIKTVIHDLQMQFSPPNLDFR
Sbjct: 24  DEGGQNVATDS--PEKPRLTKLLIDTVSLLRKSHESSWEKIKTVIHDLQMQFSPPNLDFR 81

Query: 93  GGGETEHDVKEAVGKSFDRSKETVEETAKSAANVVGEAIHKTTEKVKEGTDSEKESKAEL 152
           G  E E  VKEAV +SFD+SKE+VE TAKSAA  VGE IH T EKVKE TDS+K+SKAEL
Sbjct: 82  GKVEHE-GVKEAVERSFDKSKESVEGTAKSAAEFVGETIHNTKEKVKESTDSDKDSKAEL 140


>Medtr4g005500.1 | transmembrane protein, putative | HC |
           chr4:298731-297758 | 20130731
          Length = 156

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 70  WEKIKTVIHDLQMQFSPPNLDFRGGGETE---------HDVKEAVGKSFDRSKETVEETA 120
           W  +K +++     F PPN+DFR G E E           VKEA+ KS   SK T+E+ A
Sbjct: 72  WHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKATLEDAA 131

Query: 121 KSAANVVGEAI 131
           KSAA+ V  ++
Sbjct: 132 KSAADKVKRSL 142