Miyakogusa Predicted Gene

Lj4g3v2786870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2786870.1 Non Characterized Hit- tr|I1NWL7|I1NWL7_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,60.76,2e-17,coiled-coil,NULL; seg,NULL,CUFF.51776.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g092040.1 | ATP synthase | HC | chr8:38415191-38419458 | 2...   347   7e-96

>Medtr8g092040.1 | ATP synthase | HC | chr8:38415191-38419458 |
           20130731
          Length = 244

 Score =  347 bits (889), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 179/244 (73%), Positives = 201/244 (82%), Gaps = 3/244 (1%)

Query: 1   MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAP---PALKGDEMLKNVFVEVKSK 57
           MAL +RL SKSKL YGSQ+LLQ+E+AVPVRHFAK S     PALKGDEMLK +++EVK+K
Sbjct: 1   MALASRLASKSKLLYGSQILLQREFAVPVRHFAKGSEGSDLPALKGDEMLKKIYLEVKNK 60

Query: 58  FETALGILKKEKITIAPEDPAAVSHYANVMKTVREKANLLSESQDILATIETETQDIPDA 117
           FET++GIL+KEKITIAPEDPAAVS YA VMKT+REKANLLS +QD+ A I+ ETQDIPDA
Sbjct: 61  FETSIGILRKEKITIAPEDPAAVSQYAKVMKTIREKANLLSVAQDVKADIDIETQDIPDA 120

Query: 118 RPYLLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKGMDLLLAEFDKIN 177
           R YLLTLKEIRTK+GL DDLGAEA+M DAL+K+EK+LKKPLLRNDKKGMDLLLAEFDKIN
Sbjct: 121 RTYLLTLKEIRTKRGLTDDLGAEALMFDALEKIEKDLKKPLLRNDKKGMDLLLAEFDKIN 180

Query: 178 KQLGIRKEDLPXXXXXXXXXXXXXXXXXXXXDVVEAMETQKKREEFKDEREAVDVKTLDI 237
            +LGIRKE+LP                    D VEAMETQKKREEFKDE  AVDVKTLDI
Sbjct: 181 NKLGIRKEELPKHEEQLELKIAKAQLEELKKDAVEAMETQKKREEFKDEPAAVDVKTLDI 240

Query: 238 RNFL 241
           RNFL
Sbjct: 241 RNFL 244