Miyakogusa Predicted Gene
- Lj4g3v2785730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2785730.1 tr|Q9FJA9|Q9FJA9_ARATH Emb|CAB86890.1
OS=Arabidopsis thaliana PE=4 SV=1,70.59,0.00003,coiled-coil,NULL;
seg,NULL,CUFF.51629.1
(126 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g092180.1 | mediator of RNA polymerase II transcription su... 170 4e-43
Medtr8g092180.3 | mediator of RNA polymerase II transcription su... 170 4e-43
Medtr8g092180.6 | mediator of RNA polymerase II transcription su... 170 4e-43
Medtr8g092180.5 | mediator of RNA polymerase II transcription su... 170 4e-43
Medtr8g092180.4 | mediator of RNA polymerase II transcription su... 170 4e-43
Medtr8g092180.2 | mediator of RNA polymerase II transcription su... 170 4e-43
>Medtr8g092180.1 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38521583-38517038 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128
>Medtr8g092180.3 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38521583-38517038 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128
>Medtr8g092180.6 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38521583-38517038 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128
>Medtr8g092180.5 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38521583-38517038 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128
>Medtr8g092180.4 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38519658-38517011 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128
>Medtr8g092180.2 | mediator of RNA polymerase II transcription
subunit 28 | HC | chr8:38521583-38517038 | 20130731
Length = 145
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Query: 1 MGDRQLVEQQHSVDPQLXXXXXXXX--KDDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHP 58
MGDRQ+ + QH+VD QL KDDM+SCVM QAIDRSPHP
Sbjct: 1 MGDRQVADNQHTVDQQLPSSPPLPPPSKDDMISCVMALEAALLPCLPARELQAIDRSPHP 60
Query: 59 SHQIDVDKHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEIALMEDELDRKTELIKKQ 118
SHQIDVD+HARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEI LMEDEL+ K ELIKKQ
Sbjct: 61 SHQIDVDRHARDFMEAAKKLQLYFISLQREDKPTKAEMLRKEITLMEDELNEKNELIKKQ 120
Query: 119 ENLIQEWR 126
E+LIQEW+
Sbjct: 121 EHLIQEWK 128