Miyakogusa Predicted Gene

Lj4g3v2785650.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2785650.2 Non Characterized Hit- tr|I0YYP0|I0YYP0_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.32,5e-16,seg,NULL; CLASS II CROSSOVER JUNCTION ENDONUCLEASE
MUS81,NULL; ERCC4,ERCC4 domain; coiled-coil,NULL,CUFF.51621.2
         (558 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g092300.1 | crossover junction endonuclease EME1 | HC | ch...   721   0.0  

>Medtr8g092300.1 | crossover junction endonuclease EME1 | HC |
           chr8:38571986-38563876 | 20130731
          Length = 568

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/581 (64%), Positives = 410/581 (70%), Gaps = 38/581 (6%)

Query: 1   MEPIILSDEDDPSTPFPVHSKKRRTG-PDPNPATVYIVVDDXXXXXXXXXXXXXXXXIVA 59
           MEPIILSDEDDP+TPFPVHSKKRRT  PDP+P TV+++ DD                +V 
Sbjct: 1   MEPIILSDEDDPTTPFPVHSKKRRTSQPDPHP-TVFLIDDDPTPQKQHHLPSSTPSLVVP 59

Query: 60  ETPMSPLLDSDVAIVKCTRRTSDTSARVSPSATGKFSGISQMICLESDNESEQSGKGNWN 119
           ETP SPL DS++AIVKCT            SA    SGISQMICLESD+E E SG GNWN
Sbjct: 60  ETPFSPLFDSEIAIVKCT------------SAPTNASGISQMICLESDDEPENSGMGNWN 107

Query: 120 DNET-----MGWSSDLVGNSRWTSNPIEPLSSPESLNLGGNTTQTELTGDNASNPASSQT 174
           +NE      +     +VGNS  T + I   SS E     GN TQ E++ DN SNP SSQ 
Sbjct: 108 ENEDEARGLLSSYEPIVGNSTRTFDSIGAGSSHERFVSCGNVTQAEMSEDNPSNPTSSQA 167

Query: 175 XX-------------------XXXXXXXXXXXIKRXXXXXXXXXXXXXXXXXXXEERSRL 215
                                           +K                    EERSRL
Sbjct: 168 EEDPNERNMSLEQEENPNEKNMSQEQKENVDNMKSSKVSAKRANKATGKTKMAKEERSRL 227

Query: 216 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKFAIKSIVAKIDSKVVESGSIG 275
           M                                    GKFA+K IVA+ID+KVVESGSIG
Sbjct: 228 MEEKKLLKEQEKLKKEAMKAEAAELKKIEKEKQKWEKGKFAMKYIVAEIDAKVVESGSIG 287

Query: 276 GHLLTRFAEKGLKYQITSNPITGSILWSMEVPEHISQLSTERVEIPYVLLVYEADKFCNL 335
           GHLLTRFAEKGL Y ITSNPI+GSILWSM+VPE ISQLSTERVEIPYVLLVYEADKFCNL
Sbjct: 288 GHLLTRFAEKGLTYHITSNPISGSILWSMKVPEQISQLSTERVEIPYVLLVYEADKFCNL 347

Query: 336 TMDNSFFDQLSSIQSHYPAYTVCYLTNRLFSYINKREQEKYKNPENNSSWRRPPVEEVLA 395
           T+++S FDQL+SI+SHYPAYTVCYLTNRLFSYINKREQEKYKNPENNS WRRPPVEEVLA
Sbjct: 348 TVNDSIFDQLNSIRSHYPAYTVCYLTNRLFSYINKREQEKYKNPENNSCWRRPPVEEVLA 407

Query: 396 KLTTNFTKVHSRQCVDEAELAEHVVGLTSSLASCQFRKKLTRLSVNANGSLIPKDSVDRN 455
           KLTTNFTK+HSRQCVDEAELAEHV GLT SLASCQFRKKLTRLSVNANGSL+ KDSVDRN
Sbjct: 408 KLTTNFTKIHSRQCVDEAELAEHVAGLTCSLASCQFRKKLTRLSVNANGSLVSKDSVDRN 467

Query: 456 LIKKSLWLKALVAIPKVQPRFAIAIGKKYPTMKSLLSVYMDPSKSEHEKEFLLKDLMTEG 515
           LIKKS WLKALVAIPKVQPRFAIAI KKYPTMKSLLSVYMDP+KSEHEKEFLLKDLMTEG
Sbjct: 468 LIKKSTWLKALVAIPKVQPRFAIAIWKKYPTMKSLLSVYMDPTKSEHEKEFLLKDLMTEG 527

Query: 516 LLGGDRRLGQVCSKRVYRILMARSGSIRTDDVEDGADFFER 556
           LLGGDRRLG+VCSKRV+RILMA++GSIRTDDVE+GADFFER
Sbjct: 528 LLGGDRRLGEVCSKRVFRILMAQNGSIRTDDVENGADFFER 568