Miyakogusa Predicted Gene
- Lj4g3v2775580.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2775580.2 tr|G7LC87|G7LC87_MEDTR RNA-binding protein
OS=Medicago truncatula GN=MTR_8g092550 PE=4 SV=1,87.4,0,seg,NULL; RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; RR,CUFF.51635.2
(271 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 379 e-105
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 348 3e-96
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 348 3e-96
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 348 4e-96
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 60 3e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 57 2e-08
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 57 2e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 57 3e-08
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 4e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 1e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 54 2e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 53 4e-07
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 6e-07
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 9e-07
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 51 1e-06
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 50 3e-06
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 50 3e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 50 3e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 8e-06
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/254 (75%), Positives = 200/254 (78%), Gaps = 2/254 (0%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNL
Sbjct: 235 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAV 294
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
DRKLYVGNLHFNMTE+ LREIFEPFG +EVVQLPLDME+GHCKGFGFVQFAH
Sbjct: 295 VGPYGAV-DRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAH 353
Query: 121 LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLTLNAQSRALLM 180
LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQ EGGLTLNA SRALLM
Sbjct: 354 LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTTKSADFDDDEGGLTLNAHSRALLM 413
Query: 181 QRLAGADISTSVGVPMVNGSVPVQPAFSLPIGNPGILPGQVLPAQXX-XXXXXXXXXXSE 239
QRLAG DI+TS+GVP VNGSVPVQ AFS+P GNPG++P VLP Q SE
Sbjct: 414 QRLAGTDITTSIGVPTVNGSVPVQQAFSMPFGNPGVIPASVLPTQVMPTPVAEPVGIPSE 473
Query: 240 CLLLKNMFDPSTEV 253
CLLLKNMFDPSTE+
Sbjct: 474 CLLLKNMFDPSTEI 487
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 348 bits (893), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/261 (68%), Positives = 192/261 (73%), Gaps = 9/261 (3%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNL
Sbjct: 248 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAG 307
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
DRKLYVGNLHFNMTESQLREIFEPFG VEVVQLPLD+E+GHCKGFGF+QFAH
Sbjct: 308 VVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 121 LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLTLNAQSRALLM 180
+EHAKAAQSLNGKLEIAGRTIKVSSV DH+GSQ EGGL LNAQSRALLM
Sbjct: 368 IEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLM 427
Query: 181 QRLAGADISTSVGVPMVNGSVPVQPAFSLPIGNPGIL-------PGQVLPAQXX-XXXXX 232
Q+L + I+ S+G+PM NG P QPA SLPIGN G++ PG LP Q
Sbjct: 428 QKLDRSGITASIGLPM-NGLAPAQPAISLPIGNTGLIHPGLIPAPGLALPTQIMPTQVAE 486
Query: 233 XXXXXSECLLLKNMFDPSTEV 253
S CLLLKNMFDP+TE
Sbjct: 487 PVGTPSNCLLLKNMFDPTTET 507
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 348 bits (893), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/261 (68%), Positives = 192/261 (73%), Gaps = 9/261 (3%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNL
Sbjct: 248 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAG 307
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
DRKLYVGNLHFNMTESQLREIFEPFG VEVVQLPLD+E+GHCKGFGF+QFAH
Sbjct: 308 VVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 121 LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLTLNAQSRALLM 180
+EHAKAAQSLNGKLEIAGRTIKVSSV DH+GSQ EGGL LNAQSRALLM
Sbjct: 368 IEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLM 427
Query: 181 QRLAGADISTSVGVPMVNGSVPVQPAFSLPIGNPGIL-------PGQVLPAQXX-XXXXX 232
Q+L + I+ S+G+PM NG P QPA SLPIGN G++ PG LP Q
Sbjct: 428 QKLDRSGITASIGLPM-NGLAPAQPAISLPIGNTGLIHPGLIPAPGLALPTQIMPTQVAE 486
Query: 233 XXXXXSECLLLKNMFDPSTEV 253
S CLLLKNMFDP+TE
Sbjct: 487 PVGTPSNCLLLKNMFDPTTET 507
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 179/261 (68%), Positives = 192/261 (73%), Gaps = 9/261 (3%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNL
Sbjct: 248 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAG 307
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
DRKLYVGNLHFNMTESQLREIFEPFG VEVVQLPLD+E+GHCKGFGF+QFAH
Sbjct: 308 VVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 121 LEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLTLNAQSRALLM 180
+EHAKAAQSLNGKLEIAGRTIKVSSV DH+GSQ EGGL LNAQSRALLM
Sbjct: 368 IEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLM 427
Query: 181 QRLAGADISTSVGVPMVNGSVPVQPAFSLPIGNPGIL-------PGQVLPAQXX-XXXXX 232
Q+L + I+ S+G+PM NG P QPA SLPIGN G++ PG LP Q
Sbjct: 428 QKLDRSGITASIGLPM-NGLAPAQPAISLPIGNTGLIHPGLIPAPGLALPTQIMPTQVAE 486
Query: 233 XXXXXSECLLLKNMFDPSTEV 253
S CLLLKNMFDP+TE
Sbjct: 487 PVGTPSNCLLLKNMFDPTTET 507
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KL++G L +N+ + LR+ F +G V ++ D E+G +GFGFV F E A +A S+
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 131 NGKLEIAGRTIKVSSVTDH 149
+G+ ++ GR I+VS D
Sbjct: 97 DGQ-DLNGRNIRVSYANDR 114
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL++G + ++ E+ LRE F +G V ++ +D ++G +GFGF+ FA E A +A Q+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 130 LNGKLEIAGRTIKVSSVTDHV 150
++ K E+ GRT++V+ T+
Sbjct: 101 MDNK-ELDGRTVRVNYATERA 120
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL++G + ++ E+ LRE F +G V ++ +D ++G +GFGF+ FA E A +A Q+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 130 LNGKLEIAGRTIKVSSVTDHV 150
++ K E+ GRT++V+ T+
Sbjct: 101 MDNK-ELDGRTVRVNYATERA 120
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KLYVG + ++ ++ LRE F +G V ++ +D E G KGFGFV FA E A AA
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 131 NGKLEIAGRTIKVS 144
E+ GRT++V+
Sbjct: 101 MDNQELHGRTVRVN 114
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL++G + ++ E+ LRE F +G V ++ +D E+G +GFGF+ F +E A +A Q+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 130 LNGKLEIAGRTIKVS 144
L+G+ ++ GR ++V+
Sbjct: 103 LDGQ-DLHGRRVRVN 116
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
R ++VGN+ ++ TE QL+EI GPV +L D E+G KG+GF ++ E A +A+
Sbjct: 29 RTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARR 88
Query: 130 LNGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLTLNAQSRALLMQRLAGADIS 189
EI GR ++V + G+ G+T N AD
Sbjct: 89 NLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGP----GMTTN-------------ADPQ 131
Query: 190 TSVGVPMVNGSVPVQPAFSLPIG 212
VG+P V G Q A P+G
Sbjct: 132 KQVGIPAVQGES-TQAAQHQPMG 153
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KL++G L +N+ + LR+ F +G V ++ D E+G +GFGFV F E A +A S+
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 131 NGKLEI 136
+G++ I
Sbjct: 97 DGQVVI 102
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA- 127
+ KL+VG + +N E L + F +G V ++ +D ESG KGFGFV + +E A +A
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 128 QSLNGKLEIAGRTIKVS 144
Q+L+G+ ++ GR + V+
Sbjct: 103 QALDGQ-DLYGRRVGVN 118
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA- 127
+ KL+VG + +N E L + F +G V ++ +D ESG KGFGFV + +E A +A
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 128 QSLNGKLEIAGRTIKVS 144
Q+L+G+ ++ GR + V+
Sbjct: 103 QALDGQ-DLYGRRVGVN 118
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 2 DRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXX-XXXXXXX 59
D N+ RSKG G++ F D A+ ++G +P+ + + K+
Sbjct: 225 DANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGT 284
Query: 60 XXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA 119
+ ++VG L N+T+ L++ F +G + V++P+ KG GFVQFA
Sbjct: 285 SSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPV------GKGCGFVQFA 338
Query: 120 HLEHAKAA-QSLNGKLEIAGRTIKVS 144
+ +A+ A Q LNG + I +T+++S
Sbjct: 339 NRNNAEEALQKLNGTM-IGKQTVRLS 363
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
+LYVGNL F+MT SQL +IF G V V++ D + +GF FV E AK A +
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 131 NGKLEIAGRTIKVS 144
++ GR+ KV+
Sbjct: 170 FDGSQVGGRSAKVN 183
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Query: 2 DRNSRRSKGVGYIEFYDAMSVPMAIAL-SGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
DR + RS+G ++ A AI + G + G+ V E K
Sbjct: 143 DRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRN 202
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
K+Y GNL + M LR+ F+ + ++ + ++G +GFGFV F
Sbjct: 203 SYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFET 262
Query: 121 LEHAKAA-QSLNGKLEIAGRTIKVS 144
EH +AA ++NG +E+ GR ++++
Sbjct: 263 AEHLEAALNAMNG-VEVQGRPLRLN 286
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ-S 129
KL+VG L +++ E L++ F FG V V++ D +SG +GFGFV F++ + AK+A+ +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 130 LNGKLEIAGRTIKVS 144
++GK + GR ++++
Sbjct: 97 MDGK-ALLGRPLRIN 110
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KL+VGNL + +T L + F+ G V ++ D E+G +G+GFV +A A ++
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 131 NGKLEIAGRTIKVS 144
+E+ GRT++VS
Sbjct: 265 MDNVELEGRTLRVS 278
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KLY GNL +++ + L + E +G E++++ D ++G +GF FV + +E A Q+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 130 LNGKLEIAGRTIKVS 144
L+GK E GRT++V+
Sbjct: 174 LDGK-EFMGRTLRVN 187
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 36/157 (22%)
Query: 2 DRNSRRSKGVGYIEFYDAMSVPMAI------ALSGQLLL-------GQPVMVKPSEAEKN 48
+R++ RS+G G++ + V A+ L G+LL G P + +P
Sbjct: 156 NRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSG 215
Query: 49 LXXXXXXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESG 108
L + YVGNL +++ S L ++F G VE Q+ D E+G
Sbjct: 216 L---------------------RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETG 254
Query: 109 HCKGFGFVQFAH-LEHAKAAQSLNGKLEIAGRTIKVS 144
+GFGFV ++ E A +L+G+ GR I+V+
Sbjct: 255 RSRGFGFVTMSNEAEMNDAIAALDGQ-SFNGRAIRVN 290
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
D K++VGNL F++ +L ++FE G VE+ ++ + ++ +GFGFV + E + A
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAV 180
Query: 129 SLNGKLEIAGRTIKVS 144
+ E+ GR + V+
Sbjct: 181 NKFSGFELDGRLLTVN 196
>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:49138254-49142925 | 20130731
Length = 314
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQSL 130
L V NL + LR FE +GPV+ V LP + +G +GFGFV++ H E A+A Q L
Sbjct: 50 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQL 109
Query: 131 NGKLEIAGRTIKV 143
N + I GR I++
Sbjct: 110 NHTI-IGGREIRI 121
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ-S 129
K++V L F+ TE +L E F +G V + L+ CKGFG+V FA E A+ AQ
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 130 LNGKLEIAGRTIKV 143
+NGK+ + GR + V
Sbjct: 93 MNGKI-LHGRVLYV 105
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ-S 129
K++V L F+ TE +L E F +G V + L+ CKGFG+V FA E A+ AQ
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 130 LNGKLE 135
+NGK+
Sbjct: 93 MNGKVR 98
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXX 59
+DR + R+KG G++ F D A+ + G L +P+ + P+ + KNL
Sbjct: 201 IDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPA-SNKNLGTQTSKASYQ 259
Query: 60 X----XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGF 115
+ ++VGNL N+T+ L+++F +G + V++P SG K GF
Sbjct: 260 NPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIP----SG--KRCGF 313
Query: 116 VQFAHLEHAKAA-QSLNGKLEIAGRTIKVS 144
VQFA A+ A + LNG L + G+ +++S
Sbjct: 314 VQFADRSSAEEALRVLNGTL-LGGQNVRLS 342
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QSL 130
L V + ++ E+ LRE F +G V ++ +D E+G +GFGF+ F +E A +A Q+L
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 131 NGKLEIAGRTIKVS 144
+G+ ++ GR ++V+
Sbjct: 112 DGQ-DLHGRRVRVN 124
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 286 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGA 345
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG L + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 346 VGLTPGSAGGLEGPD--RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 403
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F +A L A +LNG +++ +T+ V
Sbjct: 404 AFCVYADLAVTDIACAALNG-IKMGDKTLTV 433
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQF-AHLEHAKAAQS 129
KL+V L F T+ QL +F PFG + L D + KGFGFV + + +E KA ++
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 130 LNGKLEIAGRTIKV 143
LNG++ + GR I V
Sbjct: 68 LNGRI-VDGRLIFV 80
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQF-AHLEHAKAA 127
+++L+VGNL F++ +QL EIFE G VE+V++ D +G +GFGFV + E AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 128 QSLNGKLEIAGRTIKVSS 145
Q LNG + + GR ++V++
Sbjct: 143 QQLNGYV-VDGRELRVNA 159
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQF-AHLEHAKAA 127
+++L+VGNL F++ +QL EIFE G VE+V++ D +G +GFGFV + E AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 128 QSLNGKLEIAGRTIKVSS 145
Q LNG + + GR ++V++
Sbjct: 143 QQLNGYV-VDGRELRVNA 159
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
R+L+VGNL F+++ SQL ++F G V V++ D + +GF FV ++E A+ A
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 130 LNGKLEIAGRTIKVS 144
+ + GR IKV+
Sbjct: 168 MFDGTTVGGRAIKVN 182
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
R+L+VGNL F+++ SQL ++F G V V++ D + +GF FV ++E A+ A
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 130 LNGKLEIAGRTIKVS 144
+ + GR IKV+
Sbjct: 168 MFDGTTVGGRAIKVN 182
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAK-AAQ 128
RKLYVGN+ ++ +L +I + G VE ++ D S + F FV +E A AA+
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 129 SLNGKLEIAGRTIKVS 144
LNG EI GR IKV+
Sbjct: 120 KLNG-TEIGGREIKVN 134
>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159814-34164480 | 20130731
Length = 286
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 36/72 (50%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L V N+ + +LR FE FGPV V +P D SG +GF FVQF A AQ
Sbjct: 49 LLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYHM 108
Query: 132 GKLEIAGRTIKV 143
+ AGR I V
Sbjct: 109 DRQIFAGREISV 120
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA-HLEHAKAAQS 129
++YV NL + + S+L ++F G + ++ D E+G +GFGFV + E A +
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
L+G+ + GRTI+VS D
Sbjct: 267 LDGQ-SLEGRTIRVSVAEDR 285
>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159851-34164480 | 20130731
Length = 249
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 36/72 (50%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L V N+ + +LR FE FGPV V +P D SG +GF FVQF A AQ
Sbjct: 49 LLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYHM 108
Query: 132 GKLEIAGRTIKV 143
+ AGR I V
Sbjct: 109 DRQIFAGREISV 120
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXX 59
+DR + RSKG G++ F D A+ + G L +P+ + P+ KN
Sbjct: 189 IDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPA-TNKNPAATTQPKASY 247
Query: 60 XXXXXXXXXD---RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFV 116
D ++VGNL N+T+ LR++F +G + V++P SG K GFV
Sbjct: 248 NPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIP----SG--KRCGFV 301
Query: 117 QFAHLEHAKAA-QSLNGKLEIAGRTIKVS 144
QF+ A+ A + LNG L + G+ +++S
Sbjct: 302 QFSDRSCAEEAIRVLNGTL-LGGQNVRLS 329
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQSL 130
++V L+ T LRE F+ FG V+ V++ D SG+ KGFG+V++A E AK Q +
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 131 NGKL 134
+GK
Sbjct: 106 DGKF 109
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 8 SKGVGYIEFYDAMSVPMAIA--LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXXXX 65
S G G++EF D+ ++ L G +L G ++++ + +
Sbjct: 686 SMGFGFVEF-DSTETATSVCNDLQGTVLDGHALILQLCHVKND-------DDKVQKKVEK 737
Query: 66 XXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAK 125
KL V N+ F TE LR++F PFG ++ ++LP M+ G+ +GF FV++ + A+
Sbjct: 738 DKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLP--MKFGNHRGFAFVEYVTQQEAQ 795
Query: 126 AAQSLNGKLEIAGRTIKV 143
A + + GR + +
Sbjct: 796 NALTALSSTHLYGRHLVI 813
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
+K++VG + N+TE + R+ F +G V+ Q+ D + +GFGFV F E S
Sbjct: 133 KKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLS 192
Query: 130 LNGKLEIAGRTIKV 143
+ K+E AG +++
Sbjct: 193 MGNKIEFAGTQVEI 206
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
LYVG L + ES L F PFG ++ V+ PLD + + FGFV F E A AA
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 132 GKLEIAGRTIKVS 144
E+ GR + V+
Sbjct: 72 DGAELYGRVLTVN 84
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L+V L + TES+++ FE +G ++ V+L D ES +G+ F+++ H KAA
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 132 GKLEIAGRTI 141
+I GR +
Sbjct: 197 DGRKIEGRRV 206
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L+V L + TES+++ FE +G ++ V+L D ES +G+ F+++ H KAA
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 132 GKLEIAGRTI 141
+I GR +
Sbjct: 197 DGRKIEGRRV 206
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L+V L + TES+++ FE +G ++ V+L D ES +G+ F+++ H KAA
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 132 GKLEIAGRTI 141
+I GR +
Sbjct: 197 DGRKIEGRRV 206
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L+V L + TES+++ FE +G ++ V+L D ES +G+ F+++ H KAA
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 132 GKLEIAGRTI 141
+I GR +
Sbjct: 197 DGRKIEGRRV 206
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 336 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 395
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 396 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 453
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + L A +LNG +++ +T+ V
Sbjct: 454 AFCVYQDLAVTDIACAALNG-IKMGDKTLTV 483
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 334 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 393
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 394 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 451
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + L A +LNG +++ +T+ V
Sbjct: 452 AFCVYQDLAVTDIACAALNG-IKMGDKTLTV 481
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 334 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 393
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 394 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 451
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKVSSVTDHV 150
F + L A +LNG +++ +T+ V +
Sbjct: 452 AFCVYQDLAVTDIACAALNG-IKMGDKTLTVRRANQNT 488
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQSL 130
LY+ NL + E +L+++F FG V ++ LD GH KG GFV F+ E A KA +
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 131 NGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLT-LNAQSRALL--MQRLAGAD 187
NGKL + + + V+ + GG+ L A+ RLA
Sbjct: 374 NGKL-VGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYHPGAPRLAPQQ 432
Query: 188 ISTSVGVPMVNGSVPVQPA---FS---LPIGNPGILPGQVLPAQ 225
+ G P G +P QPA F LP PG+ P V+P Q
Sbjct: 433 LYYGQGTP---GFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQ 473
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQSL 130
LY+ NL + E +L+++F FG V ++ LD GH KG GFV F+ E A KA +
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 131 NGKLEIAGRTIKVSSVTDHVGSQXXXXXXXXXXXXEGGLT-LNAQSRALL--MQRLAGAD 187
NGKL + + + V+ + GG+ L A+ RLA
Sbjct: 374 NGKL-VGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYHPGAPRLAPQQ 432
Query: 188 ISTSVGVPMVNGSVPVQPA---FS---LPIGNPGILPGQVLPAQ 225
+ G P G +P QPA F LP PG+ P V+P Q
Sbjct: 433 LYYGQGTP---GFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQ 473
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQSL 130
L+V L T LRE F+ FG V ++ D SG+ KGFGFV++A LE AK + +
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 131 NGKL 134
+GK
Sbjct: 113 DGKF 116
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 334 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 393
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 394 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 451
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + L A +LNG +++ +T+ V
Sbjct: 452 AFCVYQDLAVTDIACAALNG-IKMGDKTLTV 481
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 336 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 395
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 396 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 453
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + L A +LNG +++ +T+ V
Sbjct: 454 AFCVYQDLAVTDIACAALNG-IKMGDKTLTV 483
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 7 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXXXXX 66
+SKG G+++F S AI L+G +K +
Sbjct: 136 KSKGYGFVQFETEESANAAIERLNGYLVG----------DKQIYVGKFVKKSDRISSGPD 185
Query: 67 XXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKA 126
LY+ NL +++E+ LRE F FG + + + D +G KGFGFV F + E AK
Sbjct: 186 TRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKR 244
Query: 127 A-QSLNGKLEIAGRTIKVS 144
A +++NG L++ + + V+
Sbjct: 245 AMETMNG-LQLGSKILYVA 262
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 336 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 395
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 396 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 453
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKVSSVTDHV 150
F + L A +LNG +++ +T+ V +
Sbjct: 454 AFCVYQDLAVTDIACAALNG-IKMGDKTLTVRRANQNT 490
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
+ L+VGNL F++ S + + F+ G V V+ D E G KGFG V+FA E A++A
Sbjct: 329 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSALE 387
Query: 130 LNGKLEIAGRTIKV 143
+NG+ E+ R +++
Sbjct: 388 MNGQ-ELLQRAVRL 400
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 8 SKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXX 53
K ++E A+AL G + G PV V+ PS+ NL
Sbjct: 336 DKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGL 395
Query: 54 XXXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGF 113
+++VG + + TE+Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 396 VGLSPGSAGGLDGPD--RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 453
Query: 114 GFVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + L A +LNG +++ +T+ V
Sbjct: 454 AFCVYQDLAVTDIACAALNG-IKMGDKTLTV 483
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
+ L+VGNL F++ S + + F+ G V V+ D E G KGFG V+FA E A++A
Sbjct: 341 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSALE 399
Query: 130 LNGKLEIAGRTIKV 143
+NG+ E+ R +++
Sbjct: 400 MNGQ-ELLQRAVRL 412
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
+ L+VGNL F++ S + + F+ G V V+ D E G KGFG V+FA E A++A
Sbjct: 364 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSALE 422
Query: 130 LNGKLEIAGRTIKV 143
+NG+ E+ R +++
Sbjct: 423 MNGQ-ELLQRAVRL 435
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
+ L+VGNL F++ S + + F+ G V V+ D E G KGFG V+FA E A++A
Sbjct: 376 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSALE 434
Query: 130 LNGKLEIAGRTIKV 143
+NG+ E+ R +++
Sbjct: 435 MNGQ-ELLQRAVRL 447
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Query: 2 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQL-LLGQPVMV-KPSEAEKNLXXXXXXXXXX 59
DR + + +G G++EF AI + + L G+P+ V K S+ +K+L
Sbjct: 59 DRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA------ 112
Query: 60 XXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGP-VEVVQLPLDMESGHCKGFGFVQF 118
L++GNL ++ E L + F FG V ++ D ++G+ +GFGF+ +
Sbjct: 113 -----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 161
Query: 119 AHLEHAKAA-QSLNGKLEIAGRTIKVS 144
E + +A +++NG+ + R I VS
Sbjct: 162 DSFEASDSAIEAMNGQY-LCNRQITVS 187
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
D YVGNL ++E L E+F GPV V +P D + +G+GFV+F E A A
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 129 SLNGKLEIAGRTIKVSSVT 147
+ +++ G+ I+V+ +
Sbjct: 84 KVLNMIKLYGKPIRVNKAS 102
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 9 KGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXXXXXXX 68
+G+ I F + A+AL G + G + ++P +A +
Sbjct: 261 RGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGY--------- 311
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
++YVG+L + +TE +LR+ F V+ ++L +D E+G +G+ V F + K A
Sbjct: 312 -NRIYVGSLSWEITEEELRKFFSNCN-VKAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL 369
Query: 129 SLNGKLEIAGRTIKVS 144
+L+ + + GR +++S
Sbjct: 370 ALDQSV-LFGRPVRIS 384