Miyakogusa Predicted Gene

Lj4g3v2731570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2731570.1 Non Characterized Hit- tr|I1N9I5|I1N9I5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18985
PE,85.53,0,POTASSIUM CHANNEL REGULATORY FACTOR,NULL; PRE-MRNA SPLICING
FACTOR-RELATED,NULL; Functional domain o,CUFF.51582.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g095000.1 | splicing factor Prp18 family protein | HC | ch...   265   1e-71

>Medtr7g095000.1 | splicing factor Prp18 family protein | HC |
           chr7:37973877-37978307 | 20130731
          Length = 411

 Score =  265 bits (677), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/152 (80%), Positives = 138/152 (90%), Gaps = 1/152 (0%)

Query: 1   MPEAKRRTADGKSLVARFKQCARYLNPLFKFCRNKILPDDIRQALLLMVECFMKRDYQAA 60
           M E ++RTA GKS+VA FKQCARYLNPLFKFCR K+L DDIRQAL+LMV+C M+RDY AA
Sbjct: 240 MAETEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLQDDIRQALMLMVDCCMRRDYLAA 299

Query: 61  MSHYMKLAVGNAPWPIGVTMVGIHERSAREKIHTNSVAHIMNDETTRKYLQSVKRLMSIC 120
           M HY++LA+GNAPWPIGVTMVGIHERSAREKI+TNSVAHIMNDETTRKYLQSVKRLM+ C
Sbjct: 300 MDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFC 359

Query: 121 QLLYPTLPSKAFEFNSLANGGSDLKSLLAEDK 152
           Q  YPTLPSKA EFNSLAN GSDL+SLLAE++
Sbjct: 360 QRRYPTLPSKAVEFNSLAN-GSDLQSLLAEER 390