Miyakogusa Predicted Gene

Lj4g3v2730340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2730340.1 Non Characterized Hit- tr|D8SEY2|D8SEY2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.67,0.00000000000004,seg,NULL; eIF-4B,Plant specific
eukaryotic initiation factor 4B; SUBFAMILY NOT NAMED,NULL; FAMILY
NO,NODE_16003_length_761_cov_234.578186.path2.1
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089785.1 | plant-specific eukaryotic initiation factor 4B...   317   8e-87
Medtr4g074040.1 | plant-specific eukaryotic initiation factor 4B...    55   1e-07

>Medtr8g089785.1 | plant-specific eukaryotic initiation factor 4B |
           HC | chr8:37419900-37412273 | 20130731
          Length = 529

 Score =  317 bits (812), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/263 (63%), Positives = 187/263 (71%), Gaps = 2/263 (0%)

Query: 5   RERPRLVLDPRKGDGSVNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKA 64
           ++RPRLVLDPRKGD SVNE+P   TNKP+PFGAARPREEVLA+KG DWKKLDSEIEAKK 
Sbjct: 253 QQRPRLVLDPRKGDSSVNESPVVKTNKPNPFGAARPREEVLAEKGYDWKKLDSEIEAKKT 312

Query: 65  X--XXXXXXXXXXXXXXXXEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELE 122
                              EG D  LKPRPKVNPFG+AKPREVLL+ERG DWRK+DLELE
Sbjct: 313 SRPTSSHSSRPSSAQSNRSEGQDGALKPRPKVNPFGDAKPREVLLSERGKDWRKMDLELE 372

Query: 123 RRGVDRPXXXXXXXXXXXXXXXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXX 182
            R VDRP                        +NSN+ESAD +G +QTG HA         
Sbjct: 373 HRAVDRPETIEEKLLKEEIDNLKKQLENESTVNSNEESADGSGGDQTGTHAMLLEKEREL 432

Query: 183 XXXIHDLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTG 242
              I DLDDKVRFGQKAV+RPGSSAG+T   SDRPPSRSGSFEDSRSVDF+DRPRSRGTG
Sbjct: 433 ELLIRDLDDKVRFGQKAVERPGSSAGKTAGFSDRPPSRSGSFEDSRSVDFTDRPRSRGTG 492

Query: 243 DAWMRPSDDRRQFQGSRERGFFS 265
           D  MRP+DDRRQFQGS++RG+FS
Sbjct: 493 DTSMRPTDDRRQFQGSKDRGWFS 515


>Medtr4g074040.1 | plant-specific eukaryotic initiation factor 4B |
           HC | chr4:28133905-28131623 | 20130731
          Length = 391

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 14/71 (19%)

Query: 7   RPRLVLDPRKGDGSVNETPPAMTN-----------KP---SPFGAARPREEVLAQKGLDW 52
           RPRLVL PR    S        TN           KP   +PFG ARPRE+VLA+KG DW
Sbjct: 266 RPRLVLQPRTAPVSNENQDAVATNTNGGVVSGNVAKPKGANPFGEARPREQVLAEKGQDW 325

Query: 53  KKLDSEIEAKK 63
           KK+D ++E  K
Sbjct: 326 KKIDEQLETMK 336



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)

Query: 87  VLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELE 122
           V KP+   NPFGEA+PRE +LAE+G DW+KID +LE
Sbjct: 299 VAKPK-GANPFGEARPREQVLAEKGQDWKKIDEQLE 333