Miyakogusa Predicted Gene
- Lj4g3v2717140.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2717140.1 Non Characterized Hit- tr|C6SVN2|C6SVN2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15937
PE,53.33,3e-19,RRM,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; RNA-binding do,CUFF.51559.1
(141 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 174 2e-44
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 8e-39
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 100 3e-22
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 92 1e-19
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 4e-17
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 4e-17
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 7e-17
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 3e-16
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 3e-16
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 3e-16
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 3e-16
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 7e-16
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-15
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 1e-13
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-13
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 68 3e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 67 5e-12
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-11
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-11
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-11
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-11
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 5e-11
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 1e-10
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 1e-10
Medtr8g070990.8 | RNA-binding protein, putative | HC | chr8:3009... 62 2e-10
Medtr8g070990.2 | RNA-binding protein, putative | HC | chr8:3009... 62 2e-10
Medtr8g070990.20 | RNA-binding protein, putative | HC | chr8:300... 62 2e-10
Medtr8g070990.18 | RNA-binding protein, putative | HC | chr8:300... 62 2e-10
Medtr8g070990.27 | RNA-binding protein, putative | HC | chr8:300... 62 2e-10
Medtr8g070990.10 | RNA-binding protein, putative | HC | chr8:300... 62 2e-10
Medtr8g070990.9 | RNA-binding protein, putative | HC | chr8:3009... 62 2e-10
Medtr8g070990.19 | RNA-binding protein, putative | HC | chr8:300... 62 2e-10
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 3e-10
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 61 4e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-10
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 60 6e-10
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-10
Medtr8g070990.7 | RNA-binding protein, putative | HC | chr8:3009... 60 7e-10
Medtr8g070990.11 | RNA-binding protein, putative | HC | chr8:300... 60 7e-10
Medtr8g070990.5 | RNA-binding protein, putative | HC | chr8:3009... 60 7e-10
Medtr8g070990.1 | RNA-binding protein, putative | HC | chr8:3009... 60 7e-10
Medtr8g070990.3 | RNA-binding protein, putative | HC | chr8:3009... 60 7e-10
Medtr8g070990.13 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.24 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.6 | RNA-binding protein, putative | HC | chr8:3009... 60 8e-10
Medtr8g070990.15 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.28 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.22 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.29 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.21 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.26 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.30 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.17 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.14 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.23 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.31 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.16 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.25 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr8g070990.4 | RNA-binding protein, putative | HC | chr8:3009... 60 8e-10
Medtr8g070990.12 | RNA-binding protein, putative | HC | chr8:300... 60 8e-10
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-09
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 59 1e-09
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 59 1e-09
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 3e-09
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 3e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 58 3e-09
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-09
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 4e-09
Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7... 57 6e-09
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 8e-09
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 8e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 8e-09
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 56 9e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 1e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 56 1e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 3e-08
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 54 4e-08
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 54 5e-08
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 6e-08
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 6e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 53 8e-08
Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-08
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-08
Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-08
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 1e-07
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 1e-07
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 1e-07
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 1e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-07
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 1e-07
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 1e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 52 2e-07
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 52 2e-07
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 52 2e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 52 2e-07
Medtr5g008890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 51 3e-07
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 51 3e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 51 4e-07
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 50 5e-07
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 50 9e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 50 9e-07
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 49 1e-06
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 49 1e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 49 2e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 49 2e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 49 2e-06
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 2e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 48 3e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 48 3e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 48 3e-06
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 3e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 47 4e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 5e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 5e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 5e-06
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 47 5e-06
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 7e-06
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 9e-06
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 9e-06
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 10 PRGLRRLFCTN--STSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKF 67
PR RLFCTN ++SP+ P + PP+ RQM EPSTNLFVSGL+KRTTTE LRE F KF
Sbjct: 15 PRSFCRLFCTNPIASSPAFPSFSSSPPSARQMAEPSTNLFVSGLSKRTTTETLREAFQKF 74
Query: 68 GEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPG 127
GEVVHARVVTDRVSGYSKGFGFVKYAT+E+A+KGI+GMDGKFL+GWVIFAEYA+ P PG
Sbjct: 75 GEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLEGWVIFAEYARPRPPPG 134
Query: 128 QQPANNMTNPY 138
+ NN PY
Sbjct: 135 EA-VNNTGRPY 144
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 93/119 (78%), Gaps = 3/119 (2%)
Query: 5 AAVAAPRGLRRLFCTNST--SPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLRE 62
AAVAAPRG R FCT T SP+ P + +G + + EP+ +FV+GLNKRTT+E LRE
Sbjct: 4 AAVAAPRGFCRFFCTKPTASSPTVPLS-SGVTSALKTAEPNEIVFVTGLNKRTTSETLRE 62
Query: 63 EFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAK 121
F KFGEV RVV DRVSGYSKGFG+V+YAT E+A+KGIQGMDGKFL+GW++FAEYA+
Sbjct: 63 AFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWIVFAEYAR 121
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+SGL++ TT EKL E F+ FG+++ A+V+TDR SG SKGF FV Y+TIEEA K
Sbjct: 34 SPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAR 93
Query: 103 QGMDGKFLDGWVIFAEYAK 121
+GM+ KFLDGWVIF + AK
Sbjct: 94 EGMNAKFLDGWVIFVDPAK 112
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T L+VSGL+ RTT E LR F FG++V +V D+V+ +GF F++YAT EE+ K I+
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 104 GMDGKFLDGWVIFAEYAK 121
GM GKFLDG VIF E AK
Sbjct: 155 GMHGKFLDGRVIFVEVAK 172
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+T LFV G++ T + L + F+K+G+V+ AR++ DR SG SKGFGFV Y T+EEAS
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 102 IQGMDGKFLDGWVIFAEYAKSSPAPG 127
IQ +DG+ L G + +A P G
Sbjct: 102 IQALDGQDLYGRRVGVNFANERPRDG 127
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+T LFV G++ T + L + F+K+G+V+ AR++ DR SG SKGFGFV Y T+EEAS
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 102 IQGMDGKFLDGWVIFAEYAKSSPAPG 127
IQ +DG+ L G + +A P G
Sbjct: 102 IQALDGQDLYGRRVGVNFANERPRDG 127
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+T LF+ G++ T LRE F+++GEV+ AR++ DR +G S+GFGF+ + ++EEAS
Sbjct: 40 PTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSA 99
Query: 102 IQGMDGKFLDGWVIFAEYAKSSP 124
IQ +DG+ L G + YA P
Sbjct: 100 IQALDGQDLHGRRVRVNYANERP 122
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV GL+ TT + L + F+ +G+VV A+V+TDR+S SKG+GFV +A+ +EA K I M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 106 DGKFLDGWVIFAEYAK 121
+ K L+G V+F +YAK
Sbjct: 94 NEKALNGRVVFVDYAK 109
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
S L+V G++ T LRE FA++G+V+ ARV+ DR G SKGFGFV +AT EEAS
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 102 IQGMDGKFLDGWVIFAEYAKSSP 124
+Q MD + L G + YA+ P
Sbjct: 98 LQAMDNQELHGRTVRVNYAQERP 120
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+ G++ T LRE F+++G+V+ A+++ DR +G S+GFGF+ +AT EEAS +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPG 127
Q MD K LDG + YA PG
Sbjct: 99 QAMDNKELDGRTVRVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+ G++ T LRE F+++G+V+ A+++ DR +G S+GFGF+ +AT EEAS +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPG 127
Q MD K LDG + YA PG
Sbjct: 99 QAMDNKELDGRTVRVNYATERARPG 123
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV+GL+ T+ + LR F FGE+V +V+ D++S SKG+ F++Y T E AS ++ M
Sbjct: 194 LFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEM 253
Query: 106 DGKFLDGWVIFAEYAKSSP 124
+GK ++GW+I + AK++P
Sbjct: 254 NGKIINGWMIVVDVAKTTP 272
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 9 APRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFG 68
AP L+ + C + PTT+ +L V+G++ T LRE F+++G
Sbjct: 26 APSALQAIRC-----------MCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYG 74
Query: 69 EVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
EV+ AR++ DR +G S+GFGF+ + ++EEAS IQ +DG+ L G + YA P
Sbjct: 75 EVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERP 130
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T L+VSGL+ RTT E LR F FG++V +V D+V+ +GF F++YAT EE+ K I+
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 104 GMDGKF 109
GM GK
Sbjct: 155 GMHGKI 160
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
S+ LF+ GL+ + LR+ F +G+VV ARV+TDR +G S+GFGFV + + E A+
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 102 IQGMDGKFLDGWVIFAEYAKSSPA 125
+ MDG+ L+G I YA A
Sbjct: 94 LS-MDGQDLNGRNIRVSYANDRQA 116
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
TNL++ L + L + F +FGE+V A+V+ DR++G SKG+GFVKYA I A+ I
Sbjct: 450 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAI 509
Query: 103 QGMDGKFLDGWVIFAEYA 120
M+G L+G I A
Sbjct: 510 VAMNGYRLEGRTIAVRVA 527
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L++ EKL+E F++FG + +V+ D G+SKGFGFV ++T EEASK I G
Sbjct: 210 NLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEASKAING 268
Query: 105 MDGKFL 110
M GK +
Sbjct: 269 MSGKII 274
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G N+FV L+ + L + FA FG V+ +V D +G S G+GFV+Y
Sbjct: 7 PSIRKTG--FANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYD 63
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYAR 140
E A I+ +DG + F Y + + TN Y +
Sbjct: 64 NHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVK 110
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
++ +FV GL TT EKL E F+++G VV A +V ++ KGFG+V +A EEA K
Sbjct: 31 TSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQ 90
Query: 103 QGMDGKFLDGWVIFAE 118
GM+GK L G V++ +
Sbjct: 91 IGMNGKILHGRVLYVD 106
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRQGPPDIAD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRQGPPDIAD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRQGPPDIAD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F GPP + +L V + RTT + L F K+G+VV + DR +G S+
Sbjct: 2 SHFGRQGPPDIAD----TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EASK + +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGP 96
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T LFVS L+ TT ++L F+ FG + A ++TD+ + KGFGFV Y + EA K +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 104 GMDGKFLDGWVIFAEYAK 121
++G+ +DG +IF E+AK
Sbjct: 67 ALNGRIVDGRLIFVEHAK 84
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M + FV GL T E L + F+++GE+V ++++ DR +G S+GFGFV +A +
Sbjct: 1 MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSM 60
Query: 99 SKGIQGMDGKFLDGWVIFAEYAKS 122
+ I+ M+G+ LDG I A+S
Sbjct: 61 NDAIEAMNGQDLDGRNITVNQAQS 84
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
S+ LF+ GL+ + LR+ F +G+VV ARV+TDR +G S+GFGFV + + E A+
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 102 IQGMDGKFL 110
+ MDG+ +
Sbjct: 94 LS-MDGQVV 101
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M + FV GL T E L + F+++GE+V ++++ DR +G S+GFGFV +A +
Sbjct: 1 MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSM 60
Query: 99 SKGIQGMDGKFLDG 112
+ I+ M+G+ LDG
Sbjct: 61 NDAIEAMNGQDLDG 74
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
FV GL T +E L + F+++GE++ ++++ DR +G S+GFGFV +A + I+GM
Sbjct: 10 CFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGM 69
Query: 106 DGKFLDGWVIFAEYAKS 122
+G+ +DG I A+S
Sbjct: 70 NGQDMDGRNITVNEAQS 86
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P NL+V+GL+ R T +L + F+ G+VV +V D + S+GFGFV T+EEA +
Sbjct: 43 PGNNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRC 102
Query: 102 IQGMDGKFLDGWVIFAEYA 120
++ ++ L+G VI E A
Sbjct: 103 VKYLNRSVLEGRVITVEKA 121
>Medtr8g070990.8 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 955
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 292
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 357 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 416
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 417 LDLTNGTALEKNGQILRVAYAKSILGPG 444
>Medtr8g070990.2 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 1062
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 399
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 464 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 523
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 524 LDLTNGTALEKNGQILRVAYAKSILGPG 551
>Medtr8g070990.20 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 914
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 292
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 357 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 416
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 417 LDLTNGTALEKNGQILRVAYAKSILGPG 444
>Medtr8g070990.18 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 841
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 292
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 357 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 416
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 417 LDLTNGTALEKNGQILRVAYAKSILGPG 444
>Medtr8g070990.27 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 841
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 292
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 357 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 416
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 417 LDLTNGTALEKNGQILRVAYAKSILGPG 444
>Medtr8g070990.10 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 1021
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 399
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 464 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 523
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 524 LDLTNGTALEKNGQILRVAYAKSILGPG 551
>Medtr8g070990.9 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 948
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 399
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 464 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 523
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 524 LDLTNGTALEKNGQILRVAYAKSILGPG 551
>Medtr8g070990.19 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 948
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPGQQPA 131
+ G DG +DG +F EY+K + G A
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYSKPTGGAGSDGA 399
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 464 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 523
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 524 LDLTNGTALEKNGQILRVAYAKSILGPG 551
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S L V L++ L+E F+ FGEVV +V DR KG+G+V + T EA K +
Sbjct: 99 SLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKAL 158
Query: 103 QGMDGKFLDGWVIFAEYA-----KSSPAP 126
MDG +DG V+ A + K+SP P
Sbjct: 159 LYMDGAQIDGNVVKARFTLPPRQKASPPP 187
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
EP ++V+ L +L + F++ G++V ARVV DR +G S+GFGFV + E +
Sbjct: 203 EPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMND 262
Query: 101 GIQGMDGKFLDGWVIFAEYAKSSPAPG 127
I +DG+ L+G I A+ P G
Sbjct: 263 AIAALDGQSLEGRTIRVSVAEDRPRRG 289
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 36 TRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATI 95
TR M S NLF+ G++ T LR+ F+ +G+V+ A+++ DR +G +GFGFV +AT
Sbjct: 28 TRSM--SSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATT 81
Query: 96 EEASKGIQ-------GMDGKFLDGWVIFAEYAKSSPAPG 127
EEAS +Q M + L G + YA PG
Sbjct: 82 EEASAALQTMSLAIKSMKNQDLYGRKVRVNYATEKSGPG 120
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ ++K EKL+E F++FG + +V++D G SKG GFV + T EEASK I
Sbjct: 305 NLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSD-ARGRSKGVGFVAFTTPEEASKAIDE 363
Query: 105 MDGKFLDGWVIFAEYAK 121
M+GK + ++ A+
Sbjct: 364 MNGKIIGQKPVYVSVAQ 380
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P R+ G NLF+ L + L E F+ FG V+ +V D +G+SKG GFV++
Sbjct: 105 PLIRKTG--FANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFD 161
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEY-----AKSSPAPGQQPANNMTNPY 138
+ A I+ +DG ++ ++ Y +SSP N++ Y
Sbjct: 162 NDQSAKNAIEKLDGMLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESY 211
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
FV GL T ++ L + F+KFGE+ ++V+ DR +G S+GFGFV +A + I+ M
Sbjct: 10 CFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 106 DGKFLDGWVIFAEYAKS 122
+G+ +DG I A+S
Sbjct: 70 NGQDIDGRNITVNEAQS 86
>Medtr8g070990.7 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 956
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.11 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 956
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.5 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 956
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.1 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 1063
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.3 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 1063
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.13 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 949
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.24 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 949
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.6 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 949
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.15 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 949
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.28 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.22 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 915
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.29 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.21 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 915
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.26 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.30 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 915
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.17 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.14 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 915
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.23 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.31 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.16 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.25 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 201 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 259
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 260 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 287
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 358 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 417
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 418 LDLTNGTALEKNGQILRVAYAKSILGPG 445
>Medtr8g070990.4 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 1022
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr8g070990.12 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 1022
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+++TT E L + A++G + H RV+ +R SG S+GF F+ + ++ A++G
Sbjct: 308 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSV-GAAQG 366
Query: 102 IQ---GMDGKFLDGWVIFAEYAKSSPAPG 127
+ G DG +DG +F EY+ S P G
Sbjct: 367 MMDKLGGDGLVVDGRKLFFEYS-SKPTGG 394
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P+ L V GL++ E LR EF+K + R+V D+ + S+GF FV + ++E+A+K
Sbjct: 465 PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 524
Query: 102 IQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ +G L+ G ++ YAKS PG
Sbjct: 525 LDLTNGTALEKNGQILRVAYAKSILGPG 552
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
++ +FV GL TT EKL E F+++G VV A +V ++ KGFG+V +A EEA K
Sbjct: 31 TSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQ 90
Query: 103 QGMDGK 108
GM+GK
Sbjct: 91 IGMNGK 96
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L+ EKL++ F++FG V RV+ D G+SKG GFV ++T EEA+K +
Sbjct: 314 NLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNE 372
Query: 105 MDGKFLDGWVIFAEYAK 121
M+GK + +F A+
Sbjct: 373 MNGKLVGRKPLFVAVAQ 389
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G S N+F+ L+ + L + FA FG V+ +V D +G SKG+GFV++
Sbjct: 110 PSVRKSG--SGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFD 166
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEY 119
E A I+ +DG ++ ++ +
Sbjct: 167 NEEAAKSAIKQLDGMLINDKQVYVGF 192
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L+ EKL++ F++FG V RV+ D G+SKG GFV ++T EEA+K +
Sbjct: 314 NLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNE 372
Query: 105 MDGKFLDGWVIFAEYAK 121
M+GK + +F A+
Sbjct: 373 MNGKLVGRKPLFVAVAQ 389
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G S N+F+ L+ + L + FA FG V+ +V D +G SKG+GFV++
Sbjct: 110 PSVRKSG--SGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFD 166
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEY 119
E A I+ +DG ++ ++ +
Sbjct: 167 NEEAAKSAIKQLDGMLINDKQVYVGF 192
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+L+E FA +GEV+ A ++ DR +G ++GFGFV ++ A + I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMT 135
D +DG + E K+ P QQ N T
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQNINRQT 93
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+L+E FA +GEV+ A ++ DR +G ++GFGFV ++ A + I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMT 135
D +DG + E K+ P QQ N T
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQNINRQT 93
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G+ N+F+ L+K + L + F+ FG ++ +V D SG SKG+GFV++
Sbjct: 114 PSIRKSGQ--GNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFD 170
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
T E A K I+ ++G L+ ++
Sbjct: 171 TEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
N+FV L++ TT ++L++ F +FG + A V+ D G SK FGFV + + ++A++ ++
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVE 271
Query: 104 GMDGKFLDG--WVIFAEYAKS 122
++GK +D W + KS
Sbjct: 272 ALNGKKIDDKEWYVGKAQKKS 292
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL+V L+ EKL+E F+ +G + +V+ D +G S+G GFV ++T EEAS+ +
Sbjct: 317 NLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLE 375
Query: 105 MDGKFLDGWVIFAEYAK 121
M+GK + ++ A+
Sbjct: 376 MNGKMVASKPLYVTLAQ 392
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + LRE F K+G+++ A +++D+V+G SKG+GFV + + A K +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + LRE F K+G+++ A +++D+V+G SKG+GFV + + A K +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
chr7:31471924-31467830 | 20130731
Length = 566
Score = 57.0 bits (136), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 37 RQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIE 96
+ G+P LFV L++ TT E LR+ ++FG+V + R+V D V+G S+G+ FV++ T
Sbjct: 56 KATGDPYCTLFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETER 115
Query: 97 EASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
E + +D I +Y + PG P
Sbjct: 116 EMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIP 149
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T LFV GL T E +R F +FGE++ A V+TD+ +G SKG+GFV + E A + Q
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 104 G----MDGK 108
+DG+
Sbjct: 85 NPSPVIDGR 93
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T LFV GL T E +R F +FGE++ A V+TD+ +G SKG+GFV + E A + Q
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 104 G----MDGK 108
+DG+
Sbjct: 85 NPSPVIDGR 93
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV GL+ + L++ F+ FG+V R+V D+ SG ++GFGFV ++ + A M
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 106 DGKFLDGWVIFAEYAKSSP 124
DGK L G + +A P
Sbjct: 98 DGKALLGRPLRINFALEKP 116
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
+M LFV G+++ TT + L+ F K+G+V+H+ + DR + +GFGFV ++ I
Sbjct: 4 KMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISS 63
Query: 98 ASKGIQ 103
A +Q
Sbjct: 64 AHNALQ 69
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L+ T EKL E F++FG V +++ D G S+G GFV ++T EEA++ +
Sbjct: 307 NLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAE 365
Query: 105 MDGKFLDGWVIFA 117
M+GK + G ++
Sbjct: 366 MNGKMVAGKPLYV 378
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G + N+F+ L++ + L + F+ FG ++ ++ D SG SKG+GFV++
Sbjct: 104 PSVRKSG--AANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFE 160
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
E A I ++G L+ ++
Sbjct: 161 NEESAQSAIDKLNGMLLNDKPVYV 184
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
ST LF++GL+ T LR+ F + G+++ +V+ + +G SKG+GFV++ + A+
Sbjct: 30 HSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 101 GIQGMDGKFLDGWVIFAEYAK 121
+ + G+ +DG I YA
Sbjct: 90 ARKELHGQIVDGRRIRVGYAH 110
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G P NLF+ + + ++L F FG V+ A+V D+ +G SK FGFV Y + E A
Sbjct: 345 GPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQ 404
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSS 123
I M+G L G + ++ + +
Sbjct: 405 SAISMMNGCQLGGKKLKVQHKRDN 428
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P++R+ G + N+F+ L+K + L + F+ FG+++ ++ TD SG SKG+GFV++
Sbjct: 112 PSSRKSG--TANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFE 168
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
+ A I ++G ++ +F
Sbjct: 169 AEDSAQNAIDKLNGMLINDKQVFV 192
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L+ T EKL+E F++FG + +++ D +G S+G GFV ++T EEAS+ +
Sbjct: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDP-NGVSRGSGFVAFSTPEEASRALGE 374
Query: 105 MDGKFL 110
M+GK +
Sbjct: 375 MNGKMI 380
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
N++V L++ T + L+ EF +G + A ++ D G SK FGFV + E+A+K ++
Sbjct: 211 NNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVE 269
Query: 104 GMDGKFLDG--WVIFAEYAKS 122
++GK +D W + KS
Sbjct: 270 ALNGKKVDDKEWYVGKAQKKS 290
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G P NLF+ + + ++L F FG V+ A+V D+ +G SK FGFV Y + E A
Sbjct: 344 GPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQ 403
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSS 123
I M+G L G + ++ + +
Sbjct: 404 SAISMMNGCQLGGKKLKVQHKRDN 427
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V+GL+ R T L E F+K G+V +V + + S+GF FV T E+A++ I+ +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 106 DGKFLDGWVIFAEYAK----SSPAPGQ 128
+ L+G I E +K +P PG
Sbjct: 193 NQSILEGRYITVERSKRKRPRTPTPGH 219
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIE-------EA 98
LFV GL+ TTTE LR F+ +G++ A V+ D+ +G SKG+GFV Y ++ E
Sbjct: 78 LFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKEP 137
Query: 99 SKGIQG 104
SK I G
Sbjct: 138 SKKIDG 143
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S +FV + + E L EF+K+GE+ + D+ SG ++GF F Y T EE +K
Sbjct: 162 SRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKT-EEGAKNS 220
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAP---GQQPA 131
K +DG + ++A + P GQ P+
Sbjct: 221 VAESMKTVDGHQVICKFAVDNKKPKPVGQNPS 252
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ GL TTTE LR F+ +GE+ A V+ D+ +G SKG+GFV + ++ A ++
Sbjct: 75 LFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALR-E 133
Query: 106 DGKFLDGWVIFAEYA 120
K +DG V + A
Sbjct: 134 PSKRIDGRVTVTQLA 148
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVV-HARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
NLF+ L+ + L + F+ FG +V + +++ D +G S+GFGF+ Y + E + I+
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
Query: 104 GMDGKFLDGWVIFAEYA 120
M+G++L I YA
Sbjct: 173 AMNGQYLCNRQITVSYA 189
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
T +FV GL T T+++R F +FG+++ A ++TD+ +G SKG+GFV + E A +
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T +E +R F +FG+++ A V+TD+ +G SKG+GFV + E A +
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARR 85
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TNL+V L+ T + L E+F+ FG++V + D +G SKGFGFV Y + ++A + ++
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAME 252
Query: 104 GMDGKFLDGWVIFAEYAK 121
MDG +++ A+
Sbjct: 253 AMDGSQFGSKILYVARAQ 270
Score = 53.9 bits (128), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 37 RQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIE 96
+ MG +N++V ++ E+LR+ F+ GEV+ A+V+ D G SKGFGFV ++T+
Sbjct: 289 KHMG---SNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDD-KGTSKGFGFVCFSTVV 344
Query: 97 EASKGIQGMDGKFLDGWVIFAEYAK 121
EA K + +G G ++ ++A+
Sbjct: 345 EAFKSMSCFNGCMFHGKPLYVDFAQ 369
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T ++LR+ F FG+VV A ++ DR +G ++GFGFV +A A + + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 106 DGKFLDGWVIFAEYA 120
+ +DG + A+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T ++LR+ F FG+VV A ++ DR +G ++GFGFV +A A + + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 106 DGKFLDGWVIFAEYA 120
+ +DG + A+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T ++LR+ F FG+VV A ++ DR +G ++GFGFV +A A + + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 106 DGKFLDGWVIFAEYA 120
+ +DG + A+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T +E +R F +FG+++ A V+TD+ +G SKG+GFV + E A +
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARR 85
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
EP ++V+ L +L + F++ G++V ARVV DR +G S+GFGFV + E +
Sbjct: 203 EPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMND 262
Query: 101 GIQGMDGK 108
I +DG+
Sbjct: 263 AIAALDGQ 270
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEY 119
L F + G+V+ A+V+ DR SG S+GFGFV +++ +E I+ +DG L+G I
Sbjct: 212 LESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSP 271
Query: 120 AKSSP 124
A S P
Sbjct: 272 ADSRP 276
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEY 119
L F + G+V+ A+V+ DR SG S+GFGFV +++ +E I+ +DG L+G I
Sbjct: 212 LESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSP 271
Query: 120 AKSSP 124
A S P
Sbjct: 272 ADSRP 276
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TNL++ L+ + LRE+F+ FG+++ V D +G SKGFGFV + E+A + ++
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAME 247
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+G L +++ A+
Sbjct: 248 TMNGLQLGSKILYVARAQ 265
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+N++V ++ + E LR+ F+ G + A+++ D G SKGFGFV ++T EEA+K +
Sbjct: 292 SNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDD-KGISKGFGFVCFSTPEEANKAVN 350
Query: 104 GMDGKFLDGWVIFAEYAK 121
G G ++ A+
Sbjct: 351 SFHGFMFHGKPLYVSLAQ 368
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
N+FV L + L + F KFG ++ ++VV G SKG+GFV++ T E A+ I+
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIER 157
Query: 105 MDGKFL-DGWVIFAEYAKSSPAPGQQPANNMTNPYAR 140
++G + D + ++ K S P TN Y +
Sbjct: 158 LNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMK 194
>Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 213
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V+GL+ R T L E F+K G+V +V + + S+GF FV T E+A++ I+ +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 106 DGKFLDGWVIFAE 118
+ L+G I E
Sbjct: 193 NQSILEGRYITVE 205
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
ST +F+ GL TT L + F+ FGEV +++ D+ +G S GF ++ + + A
Sbjct: 70 STKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAA 129
Query: 103 QGMDGKFLDGWVIFAEYAK 121
+ M+GK G I+ AK
Sbjct: 130 KEMNGKLFYGRFIYVTIAK 148
>Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 236
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V+GL+ R T L E F+K G+V +V + + S+GF FV T E+A++ I+ +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 106 DGKFLDGWVIFAE 118
+ L+G I E
Sbjct: 193 NQSILEGRYITVE 205
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+P LFV+ L+ TT +++ EF +G + R+VTD S +G+ F++Y +
Sbjct: 131 GDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMK 190
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
+ DG+ ++G + + + P +P
Sbjct: 191 AAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+P LFV+ L+ TT +++ EF +G + R+VTD S +G+ F++Y +
Sbjct: 131 GDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMK 190
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
+ DG+ ++G + + + P +P
Sbjct: 191 AAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+P LFV+ L+ TT +++ EF +G + R+VTD S +G+ F++Y +
Sbjct: 131 GDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMK 190
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
+ DG+ ++G + + + P +P
Sbjct: 191 AAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+P LFV+ L+ TT +++ EF +G + R+VTD S +G+ F++Y +
Sbjct: 131 GDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMK 190
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
+ DG+ ++G + + + P +P
Sbjct: 191 AAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
E LFV L T+E L + F + G VV ARV+ D +G S+G+GFV YAT E
Sbjct: 201 ETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDT 260
Query: 101 GIQGMDGKFLDG 112
+ MD L+G
Sbjct: 261 ALAIMDNVELEG 272
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 26 SPFTLTGPPTTRQMGEPS-TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS 84
+P L G Q G+ + T +FV GL T E +++ F +FGE++ A V+TD+ +G S
Sbjct: 2 TPINLAG-----QFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRS 56
Query: 85 KGFGFVKY 92
KG+GFV +
Sbjct: 57 KGYGFVTF 64
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 26 SPFTLTGPPTTRQMGEPS-TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS 84
+P L G Q G+ + T +FV GL T E +++ F +FGE++ A V+TD+ +G S
Sbjct: 2 TPINLAG-----QFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRS 56
Query: 85 KGFGFVKY 92
KG+GFV +
Sbjct: 57 KGYGFVTF 64
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + T+ + +RE G++V +++ DR +G SKG+ FV Y T E A K I
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 104 GMDGKFLDGWVI 115
+ K G +
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + T+ + +RE G++V +++ DR +G SKG+ FV Y T E A K I
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 104 GMDGKFLDGWVI 115
+ K G +
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + T+ + +RE G++V +++ DR +G SKG+ FV Y T E A K I
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 104 GMDGKFLDGWVI 115
+ K G +
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + L+ F +FG+++ A V+TDR +G SKG+GFV + A Q
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 104 GMDGKFLDGWVIFAEYAKSSPAP 126
+ +DG A P P
Sbjct: 86 NPN-PMIDGRRANCNLAYQKPDP 107
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + L+ F +FG+++ A V+TDR +G SKG+GFV + A Q
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 104 GMDGKFLDGWVIFAEYAKSSPAP---GQQPAN 132
+ +DG A P P G+Q N
Sbjct: 86 NPN-PMIDGRRANCNLAYQKPDPSLTGKQKFN 116
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + L+ F +FG+++ A V+TDR +G SKG+GFV + A Q
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 104 GMDGKFLDGWVIFAEYAKSSPAP---GQQPAN 132
+ +DG A P P G+Q N
Sbjct: 86 NPN-PMIDGRRANCNLAYQKPDPSLTGKQKFN 116
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + L+ F +FG+++ A V+TDR +G SKG+GFV + A Q
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 104 GMDGKFLDGWVIFAEYAKSSPAP 126
+ +DG A P P
Sbjct: 86 NPN-PMIDGRRANCNLAYQKPDP 107
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 30 LTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGF 89
L+ P + + EP LFV L TT E+L E F++FG V A +V D+ + SKG +
Sbjct: 316 LSNPEDKKGVSEP-CRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAY 374
Query: 90 VKYATIEEASKGIQGMDGKFLDG 112
+ ++ E A++ ++ D G
Sbjct: 375 IHFSAPEFAARALEESDNSIFQG 397
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV + + T E +R F + G VV ++ DR +G +G F+KYAT EEA + I+ +
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 106 DGKF-LDGWV--IFAEYA 120
+ L G V I YA
Sbjct: 150 HNRHTLPGGVGPIQVRYA 167
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 GPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFV 90
G ++RQ P +FV L T L+E F A++ V A+VV DR++G SKG+GFV
Sbjct: 143 GERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFV 202
Query: 91 KYATIEEASKGIQGMDG 107
++A E + + M G
Sbjct: 203 RFADEGEQMRAMTEMQG 219
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M S LF+ G++ T E+LRE F+ +GEV A ++ DR +G ++GFGFV + I+ A
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPA 58
Query: 99 SKGIQGMDGKFLDGWVIFAEYA 120
I + +DG ++ A+ A
Sbjct: 59 VADIVVQEKHNIDGRMVEAKKA 80
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P L+V+GL+ R T L + F+K G+V +V + + S+GF FV + E+A +
Sbjct: 60 PGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERC 119
Query: 102 IQGMDGKFLDGWVIFAEYAK----SSPAPGQ 128
I+ ++ L+G I E ++ +P PG
Sbjct: 120 IKHLNQSVLEGRYITVERSRRKRARTPTPGH 150
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M S LF+ G++ T E+LRE F+ +GEV A ++ DR +G ++GFGFV + I+ A
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPA 58
Query: 99 SKGIQGMDGKFLDGWVIFAEYA 120
I + +DG ++ A+ A
Sbjct: 59 VADIVVQEKHNIDGRMVEAKKA 80
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 GPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFV 90
G ++RQ P +FV L T L+E F A++ V A+VV DR++G SKG+GFV
Sbjct: 143 GERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFV 202
Query: 91 KYATIEEASKGIQGMDG 107
++A E + + M G
Sbjct: 203 RFADEGEQMRAMTEMQG 219
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 GPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFV 90
G ++RQ P +FV L T L+E F A++ V A+VV DR++G SKG+GFV
Sbjct: 143 GERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFV 202
Query: 91 KYATIEEASKGIQGMDG 107
++A E + + M G
Sbjct: 203 RFADEGEQMRAMTEMQG 219
>Medtr5g008890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:1976757-1981316 | 20130731
Length = 193
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+ V+G+++ + L+ F ++G++ + + DR +G+ KG+ ++Y EEA I+ +
Sbjct: 92 ILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENL 151
Query: 106 DGKFLDGWVIFAEYAKSS 123
+G L I+ ++A SS
Sbjct: 152 NGSVLLTQTIYVDWAFSS 169
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 48 VSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
V+ L++ T L E F FG V V D+ +G S+GFGFV + E+A + I ++G
Sbjct: 203 VTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 262
Query: 108 KFLDGWVIFAEYA 120
D ++ E+A
Sbjct: 263 YGYDNLILKVEWA 275
>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:23814162-23811233 | 20130731
Length = 220
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T+L V L K E L + F +FG V + D +G +GFGFV++ +A+
Sbjct: 43 TSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKY 102
Query: 104 GMDGKFLDGW---VIFAEYAKSSP 124
MDG+ L G V+FAE + P
Sbjct: 103 HMDGQVLLGRELTVVFAEENRKKP 126
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 GPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFV 90
G ++RQ P +FV L T L+E F A++ V A+VV DR++G SKG+GFV
Sbjct: 143 GERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFV 202
Query: 91 KYATIEEASKGIQGMDG 107
++A E + + M G
Sbjct: 203 RFADEGEQMRAMTEMQG 219
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.8 bits (120), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 30 LTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGF 89
L+ P + + EP LFV L TT E+L E F++FG V +V D+ + SKG F
Sbjct: 886 LSNPEDKKGVSEP-CRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAF 944
Query: 90 VKYATIEEASKGIQGMDGKFLDG 112
+ ++ E A++ ++ D G
Sbjct: 945 IHFSVPEFAARALEESDNSIFQG 967
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 31 TGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
TG R+ E S V+ L++ T L E F FG V V D+ +G S+GFGFV
Sbjct: 200 TGSDMRRRNDENSVR--VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFV 257
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYA 120
+ + E+A + I ++G D ++ E+A
Sbjct: 258 NFVSREDAQRAINKLNGYGYDNLILRVEWA 287
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 2 AMRAAVAAPR---GLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTE 58
AMR A PR G ++ +N T P+ +T +FV GL+ T E
Sbjct: 258 AMRIGAATPRKSSGYQQGGQSNGT-----------PSQSDTDSTNTTIFVGGLDPSATAE 306
Query: 59 KLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
LR+ F+++GE+V ++ KG GFV++A A + +Q ++G
Sbjct: 307 DLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNG 349
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 15 RLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNL--FVSGLNKRTTTEKLREEFAKFGEVVH 72
RL N +P G P RQ ++ L +V L L + F++ G+V
Sbjct: 191 RLLTVNKAAPR------GTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVES 244
Query: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
A+VV DR +G S+GFGFV + E + I +DG+ +G I A+ P
Sbjct: 245 AQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERP 296
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 41 EPSTNL--FVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
EPS +L FV L +EKL + F + G V A V+ +R + S+GFGFV +T EE
Sbjct: 117 EPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEV 176
Query: 99 SKGIQGMDGKFLDGWVI 115
+ + G LDG ++
Sbjct: 177 ERAVNKFSGFELDGRLL 193
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
+FV GL TT+ L F+++GE+ + VTD+VSG SKG+GF+ +
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF 175
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
+FV GL TT+ L F+++GE+ + VTD+VSG SKG+GF+ +
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF 175
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
+FV GL TT+ L F+++GE+ + VTD+VSG SKG+GF+ +
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF 175
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
+FV GL TT+ L F+++GE+ + VTD+VSG SKG+GF+ +
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF 175
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FV + T E+L+E + G V+ R+VTDR +G KG+GF +Y E A + +
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 106 DGKFLDGWVIFAEYAKS 122
G ++G + ++A++
Sbjct: 91 QGYEINGRQLRVDFAEN 107
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
+FV GL TT+ L F+++GE+ + VTD+VSG SKG+GF+ +
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILF 175
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
+T +FV GL+ + E LR+ F +FG+V+ ++ KG GFV+ A + A + I
Sbjct: 333 NTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPV------GKGCGFVQLADRKNAEEAI 386
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPGQQPANN 133
QG++G + + + +S PG + N
Sbjct: 387 QGLNGTVIGKQTVRLSWGRS---PGNKHGRN 414
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G L+V L+ T +LRE F FG V ++ D +G+ KGFGF+++A IE A
Sbjct: 313 GAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA- 371
Query: 100 KGIQGMDGKF 109
K Q ++GK
Sbjct: 372 KAAQSLNGKL 381
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G L+V L+ T +LRE F FG V ++ D +G+ KGFGF+++A IE A
Sbjct: 313 GAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA- 371
Query: 100 KGIQGMDGKF 109
K Q ++GK
Sbjct: 372 KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G L+V L+ T +LRE F FG V ++ D +G+ KGFGF+++A IE A
Sbjct: 313 GAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA- 371
Query: 100 KGIQGMDGKF 109
K Q ++GK
Sbjct: 372 KAAQSLNGKL 381
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S +FVS ++ T + L F KFGEV+ +VTD +G KG +V++ ++EA+
Sbjct: 510 SRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEF-MLKEAADNA 568
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPGQQP-ANNMTNPYAR 140
+DG ++ + K S AP QQ A T P+ R
Sbjct: 569 LSLDGTSFMSRIL--KVVKKSAAPAQQESAPTTTWPHVR 605
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 30 LTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGF 89
L+ P + + EP LFV L TT E+L E F++FG V ++ V+ SKG F
Sbjct: 165 LSNPEYKKGVSEP-CRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAF 223
Query: 90 VKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQ 129
+ ++ E A++ ++ + G ++ AKS+ Q
Sbjct: 224 IHFSVPEFAARALEESNNSIFQGRLLRVIPAKSNEENKDQ 263
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FVS ++ +KL E F +FGEV + D+ +G KGF Y T+E A K ++
Sbjct: 263 IFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 106 DGKFLDGWVIFAEYAKSSP 124
+ K +G ++ + A P
Sbjct: 323 N-KVFEGHTLYCQKAVDGP 340
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
+FV GL T E L F+K+GE+ + VTD+ SG SKG+ F+
Sbjct: 167 IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFI 211
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FVS ++ +KL E F +FGEV + D+ +G KGF Y T+E A K ++
Sbjct: 263 IFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 106 DGKFLDGWVIFAEYAKSSP 124
+ K +G ++ + A P
Sbjct: 323 N-KVFEGHTLYCQKAVDGP 340
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
+FV GL T E L F+K+GE+ + VTD+ SG SKG+ F+
Sbjct: 167 IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFI 211
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FVS ++ +KL E F +FGEV + D+ +G KGF Y T+E A K ++
Sbjct: 263 IFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 106 DGKFLDGWVIFAEYAKSSP 124
+ K +G ++ + A P
Sbjct: 323 N-KVFEGHTLYCQKAVDGP 340
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
+FV GL T E L F+K+GE+ + VTD+ SG SKG+ F+
Sbjct: 167 IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFI 211
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 22 TSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVS 81
++ SS + GP G L+V L+ T LRE F FG++ ++ D +
Sbjct: 286 SNASSGAAVVGP-----YGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMET 340
Query: 82 GYSKGFGFVKYATIEEASKGIQGMDGKF 109
G+ KGFGFV++A +E A K Q ++GK
Sbjct: 341 GHCKGFGFVQFAHLEHA-KAAQSLNGKL 367
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 30 LTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGF 89
L+ P + + EP LFV L TT E+L E F++FG V ++ V+ SKG F
Sbjct: 179 LSNPEYKKGVSEPC-RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAF 237
Query: 90 VKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
+ ++ E A++ ++ + G ++ AKS+
Sbjct: 238 IHFSVPEFAARALEESNNSIFQGRLLRVIPAKSN 271
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
ST +F+ GL TT L + F+ FGEV +++ D+ +G S GF ++ + + A
Sbjct: 70 STKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAA 129
Query: 103 QGMDGK 108
+ M+GK
Sbjct: 130 KEMNGK 135
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V L T+ +L + FA+ G VV +V DR++ S+GF FV + EEA + I+
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 106 DGKFLDG 112
DG + G
Sbjct: 171 DGSQVGG 177
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY---ATIEEASKGI 102
LF+ G++ T EKL+E F+ +G+V++ V+ ++ +G +GFGFV + + ++ +
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 103 QGMDGKFLD 111
+DG+ +D
Sbjct: 68 HVIDGRTVD 76
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY---ATIEEASKGI 102
LF+ G++ T EKL+E F+ +G+V++ V+ ++ +G +GFGFV + + ++ +
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 103 QGMDGKFLD 111
+DG+ +D
Sbjct: 68 HVIDGRTVD 76
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+F+ GL K TT E+ + F ++GE+ + ++ DR +G +GFGF+ YA + IQ
Sbjct: 20 IFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ 77
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
P ++FV L T L+E F +G V A+VVTD +G SKG+GFVK++ E ++
Sbjct: 106 PDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNR 165
Query: 101 GIQGMDGKF 109
+ M+G +
Sbjct: 166 AMSEMNGVY 174
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FV GL+K T LR+ F+K GE+ R+ + + +KGF +++ T+E + + +
Sbjct: 196 VFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAEL 255
Query: 106 DGKFLDG 112
++G
Sbjct: 256 KNPVING 262
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 13 LRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVH 72
L L T PS+P T + + S +F S ++ T + + F KFGEV+
Sbjct: 607 LDLLKVTQKAQPSTPGTGSSAASCPLDDADSRTIFASNVHFAATKDAICRHFNKFGEVLK 666
Query: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
A +VTD ++G KG +V++ E A + +DG
Sbjct: 667 AVIVTDSITGKPKGAAYVEFMYKEAADNAL-SLDG 700
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr6:438661-434987 | 20130731
Length = 383
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
+F+ GL + TT + + F K+GE+ + ++ DR +G +GFGF+ YA
Sbjct: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYA 94