Miyakogusa Predicted Gene

Lj4g3v2678620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2678620.1 tr|B9GY61|B9GY61_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_647445 PE=4
SV=1,94.59,0.00000000006,CALPAIN_CAT,Peptidase C2, calpain, catalytic
domain; CALPAIN,Peptidase C2, calpain family; Calpain_I,CUFF.51454.1
         (271 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088520.1 | calpain family cysteine protease | HC | chr8:3...   553   e-158

>Medtr8g088520.1 | calpain family cysteine protease | HC |
            chr8:36702342-36724494 | 20130731
          Length = 2155

 Score =  553 bits (1425), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/282 (93%), Positives = 269/282 (95%), Gaps = 11/282 (3%)

Query: 1    MRSGEAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSSGIVQGHAYSILQVREV 60
            MRSGEAQ+DLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSSGIVQGHAYSILQVREV
Sbjct: 1874 MRSGEAQLDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSSGIVQGHAYSILQVREV 1933

Query: 61   DGHKLVQIRNPWANEVEWNGPWSDSSPEWTDRIKHKLKHVSQSKDGIFWMSWQDFQIHFR 120
            DGHKLVQIRNPWANEVEWNGPWSDSSPEWTDRIKHKLKH+ QSKDGIFWMSWQDFQIHFR
Sbjct: 1934 DGHKLVQIRNPWANEVEWNGPWSDSSPEWTDRIKHKLKHIPQSKDGIFWMSWQDFQIHFR 1993

Query: 121  SIY-----------SVHGQWRGYSAGGCQDYDTWNQNPQFRLTATGQDASHPIHVFITLT 169
            SIY           +VHGQWRGYSAGGCQDYDTW+QNPQF+LTATGQDASHPIHVFITLT
Sbjct: 1994 SIYICRIYPSEMRHTVHGQWRGYSAGGCQDYDTWHQNPQFKLTATGQDASHPIHVFITLT 2053

Query: 170  QGVGFSRTTAGFRNYQSSHDSLMFYIGMRILKTRGRRAAYNIYLHESVGGTDYVNSREIS 229
            QGVGFSRTTAGFRNYQSSHDSLMFYIGMRILKTRGRRAAYNIYLHESVGGTDYVNSREIS
Sbjct: 2054 QGVGFSRTTAGFRNYQSSHDSLMFYIGMRILKTRGRRAAYNIYLHESVGGTDYVNSREIS 2113

Query: 230  CEMVLEPEPKGYTIVPTTIHPGEEAPFVLSVFTKASINLEAL 271
            CEMVLEPEPKGYTIVPTTIHPGEEAPFVLSVFTKASI LEAL
Sbjct: 2114 CEMVLEPEPKGYTIVPTTIHPGEEAPFVLSVFTKASITLEAL 2155