Miyakogusa Predicted Gene

Lj4g3v2630970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2630970.1 Non Characterized Hit- tr|B7ZY82|B7ZY82_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55.29,4e-19,seg,NULL;
WCOR413,Cold acclimation WCOR413,CUFF.51404.1
         (236 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088110.1 | cold acclimation protein WCOR413 | HC | chr8:3...   187   5e-48

>Medtr8g088110.1 | cold acclimation protein WCOR413 | HC |
           chr8:36484737-36487392 | 20130731
          Length = 234

 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 123/181 (67%), Gaps = 5/181 (2%)

Query: 58  LRSPIGHGGIGSMVKPRTSNNRSSGFRVLC-YA-RPFAPPNLQWIAAVSSLVLILAKGTT 115
           LRS   H GI     P+TS N   GFR+   YA  PF  PN+QW++ VSSLVLILAKGT 
Sbjct: 57  LRSFTRHYGIKIAHNPKTSTN---GFRLFSSYAPYPFTTPNIQWLSTVSSLVLILAKGTA 113

Query: 116 VPKSFIVPLFALQAPAGFIAWIKGSYGMWXXXXXXXXXXXXYIPGXXXXXXXXXXXXXXX 175
           VPKSFIVPLFALQAPA   +WI+G YG+W            +IPG               
Sbjct: 114 VPKSFIVPLFALQAPAPVFSWIQGRYGVWSAFLALLVRLFFHIPGELELPFIAFLLVIVA 173

Query: 176 XYEAMKFRDTKEGAFISLLIAVYLAYQHFSRTSLQKSFDQGSVVATLAVICITLVSLMLV 235
            +EA++ RDTKEGA ISLLIAVYLA+QHFSRTSL+KSFDQGSVV+TLAVI IT+ SL+L+
Sbjct: 174 PHEAVRLRDTKEGAVISLLIAVYLAFQHFSRTSLEKSFDQGSVVSTLAVIGITVASLLLL 233

Query: 236 L 236
           +
Sbjct: 234 I 234