Miyakogusa Predicted Gene

Lj4g3v2628880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2628880.1 tr|A9RJS7|A9RJS7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_203101,20,0.000001,Nucleotide-diphospho-sugar
transferases,NULL; seg,NULL; no description,NULL,CUFF.51384.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088030.1 | 16S rRNA processing protein RimM | HC | chr8:3...   241   2e-64

>Medtr8g088030.1 | 16S rRNA processing protein RimM | HC |
           chr8:36442120-36435903 | 20130731
          Length = 657

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 1   MKSPWEILESPVGSGGLISLFSKHGIADDLMNMGVEYIELCCPNERIXXXXXXXXXXXXX 60
           MKSPWEIL+SPVGSGG ISLFSKH I D+L+NMGVEY+ELCCP ER              
Sbjct: 504 MKSPWEILQSPVGSGGFISLFSKHSITDNLINMGVEYLELCCPCERSVGGNSLLVGLVDA 563

Query: 61  RTAKIGIQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDKDWVT 120
           R AKIGIQISPTIAD DENFDMILSM+FVKKLTKQS KL+FDAT KTNS++E VDKDWVT
Sbjct: 564 REAKIGIQISPTIADPDENFDMILSMEFVKKLTKQSYKLRFDATAKTNSFIESVDKDWVT 623

Query: 121 VTSTTPNSYELSCSIYNSLNLCSLDQVCMVQVRE 154
           VTS+TPNSYELSCS+Y+SLN C LD+VC+V+VRE
Sbjct: 624 VTSSTPNSYELSCSVYSSLNACPLDKVCIVEVRE 657