Miyakogusa Predicted Gene

Lj4g3v2628740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2628740.1 tr|B9H2B9|B9H2B9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_858427 PE=4 SV=1,52.48,2e-17,
,CUFF.51364.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g087930.1 | trehalose-6-phosphate synthase | HC | chr8:363...   169   4e-43
Medtr0034s0170.1 | trehalose-6-phosphate synthase | HC | scaffol...    61   2e-10
Medtr2g073260.1 | trehalose-6-phosphate synthase | HC | chr2:310...    60   6e-10

>Medtr8g087930.1 | trehalose-6-phosphate synthase | HC |
           chr8:36380019-36383777 | 20130731
          Length = 527

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 97/110 (88%)

Query: 1   MLSNIYRPSTLPKISTSKIGSKASRYKKQRSLSNIEKREIDRASGDPGRPTSRDRISLNE 60
           M SN  RPS+LP+ S+ K G KAS+YKKQRSLSNI++RE+D ASGDP RPT RDR SL+E
Sbjct: 418 MRSNSCRPSSLPRFSSGKNGPKASQYKKQRSLSNIDRREVDPASGDPWRPTGRDRTSLHE 477

Query: 61  GSSVLDLKGDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLADHSSSPST 110
           GSSVLDLKGDNYFSC+V+RKRS+ARYLLKTS D+VNLLSDLAD SSSPST
Sbjct: 478 GSSVLDLKGDNYFSCSVARKRSSARYLLKTSQDIVNLLSDLADRSSSPST 527


>Medtr0034s0170.1 | trehalose-6-phosphate synthase | HC |
           scaffold0034:94476-84414 | 20130731
          Length = 929

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 7   RPSTLPKISTSKIGSKAS-RYKKQRSLSNIEKREIDRASGDPGRPTSRDRISLNEGSSVL 65
           +P+     ++SK G K+S + K Q+ +SN ++++ +       R  + +  S N    VL
Sbjct: 827 KPALKVTPTSSKNGPKSSSQTKAQKLVSNSDQKKTNNQISSSQRHPAPENSSWN----VL 882

Query: 66  DLKGDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLAD 103
           DL  DNYFSC+V R R+ ARY+L + D VV  L  LAD
Sbjct: 883 DLNKDNYFSCSVGRNRTNARYVLDSPDHVVEFLMQLAD 920


>Medtr2g073260.1 | trehalose-6-phosphate synthase | HC |
           chr2:31040510-31030551 | 20130731
          Length = 963

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 9/98 (9%)

Query: 13  KISTSKIGSK-ASRYKKQRSLSNIEKR---EIDRASGDPGRPTSRDRISLNEGSSVLDLK 68
           KI + K G K A++ K QR +SN EK+    ++R       P   ++IS N    VLDLK
Sbjct: 868 KIPSIKNGFKSANQSKGQRPISNSEKKTANNVNRTVRKCKSPLP-EKISWN----VLDLK 922

Query: 69  GDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLADHSS 106
            +NYFSCAV R ++ AR+ L +SD+V   L  LA  SS
Sbjct: 923 KENYFSCAVGRTQTNARFTLPSSDEVAEFLKKLAHASS 960