Miyakogusa Predicted Gene

Lj4g3v2618650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2618650.1 Non Characterized Hit- tr|C0P3H6|C0P3H6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,40.32,3e-19,no
description,NULL; CPDase,2',3'-cyclic-nucleotide 3'-phosphodiesterase;
LigT-like,RNA ligase/cycli,CUFF.51380.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g087820.1 | cyclic phosphodiesterase-like protein | HC | c...   310   5e-85

>Medtr8g087820.1 | cyclic phosphodiesterase-like protein | HC |
           chr8:36333350-36335200 | 20130731
          Length = 184

 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 167/185 (90%), Gaps = 3/185 (1%)

Query: 1   MATTAIETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADD 60
           MAT++I   KKEVYSVWAIPP+ VR R+ KLMT LRS+FGGP FEPH+TVVGAI LT DD
Sbjct: 1   MATSSI---KKEVYSVWAIPPEDVRDRLTKLMTSLRSDFGGPQFEPHMTVVGAIELTPDD 57

Query: 61  ALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSSTP 120
           AL KLRSA E +K+FQVTVDRV+AGTFFYQCVYLLLHP+P ++ET+AHC  HFGYK+STP
Sbjct: 58  ALKKLRSASEGVKSFQVTVDRVSAGTFFYQCVYLLLHPTPQILETNAHCCTHFGYKNSTP 117

Query: 121 YMPHLSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTEDKTLKSWEKIA 180
           YMPH+SL+YGDLTDEEKQKAQERA +LD SLSGLSF+I++LALYKTDTEDK+LKSWEKIA
Sbjct: 118 YMPHVSLVYGDLTDEEKQKAQERANILDNSLSGLSFQISKLALYKTDTEDKSLKSWEKIA 177

Query: 181 ECTLS 185
           ECTL+
Sbjct: 178 ECTLT 182