Miyakogusa Predicted Gene

Lj4g3v2618500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2618500.1 Non Characterized Hit- tr|C6T6C4|C6T6C4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4 S,63.16,6e-18,
,CUFF.51344.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g087660.1 | hypothetical protein | HC | chr8:36219250-3621...    99   8e-22

>Medtr8g087660.1 | hypothetical protein | HC |
          chr8:36219250-36219468 | 20130731
          Length = 72

 Score = 99.0 bits (245), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 26 VAEDSSTRRLFGSSRA--IPSCGELVLKSQCSQNSKCSWCTSQDLDDMCFSKSEALRLPN 83
          VAED S+R+ F +S+   + +CGELV KS+CSQNSKCSWCTSQDLDD CFSKSEALRLP+
Sbjct: 3  VAEDGSSRKPFSTSKRPFLINCGELVSKSKCSQNSKCSWCTSQDLDDTCFSKSEALRLPH 62

Query: 84 QVFSCGSVR 92
          QVFSCG  R
Sbjct: 63 QVFSCGPTR 71