Miyakogusa Predicted Gene

Lj4g3v2606070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2606070.1 Non Characterized Hit- tr|H9VQK8|H9VQK8_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,59.42,2e-16,seg,NULL; DUF177,Protein of unknown function
DUF177,CUFF.51316.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g086630.1 | DUF177 domain protein | HC | chr8:35955300-359...   362   e-100
Medtr4g086490.1 | PPR containing plant protein | HC | chr4:33903...   250   1e-66

>Medtr8g086630.1 | DUF177 domain protein | HC |
           chr8:35955300-35960157 | 20130731
          Length = 317

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/318 (61%), Positives = 223/318 (70%), Gaps = 17/318 (5%)

Query: 5   IPSTTSSPFLQFSGWSFYNSNPQQKFTCNSFTRLRHRMISRCKTRHFCAP-FGNESSVVH 63
           +P  + S  L FS W+    N    F+CNSFT   HR +  CK RH     F  ES+V+H
Sbjct: 1   MPLLSPSAPLCFSQWN----NSLTTFSCNSFTPFLHRTVPICKARHIGGVYFRTESNVLH 56

Query: 64  KYATRSTNEG------SGVISLDW---DDDGEIEDAGSPWEGAVIYKRNASILHLEYCTT 114
           KY ++    G       G  S DW   +++   ED G PWEGAVIYKRNASILHLEYCTT
Sbjct: 57  KYVSKCKESGRDLYTEEGTTSFDWGDEEEEEIDEDEGLPWEGAVIYKRNASILHLEYCTT 116

Query: 115 LERLGLGNLSTDVSKSRAAVMGLRVTKAVKDYPNGTPVQISIDVARKKKKLRLDGIIKTV 174
           LERLGLGNLSTDVSK++A+VMGLR+TKAVKD+PNGTP+QISIDV RKKKKLRLDGIIKTV
Sbjct: 117 LERLGLGNLSTDVSKNKASVMGLRITKAVKDFPNGTPIQISIDVTRKKKKLRLDGIIKTV 176

Query: 175 IGLLCNRCCMPSAXXXXXXXXXXXXXXPIV-EPETIDLGVIFGEDKITTSGXXXXXXXXX 233
           + L+CNRCCMPSA              P V EPET+D GVIFGEDKI T G         
Sbjct: 177 LTLVCNRCCMPSAESIFSEFSLLLTEEPPVNEPETMDFGVIFGEDKIPTLGKSGDDDEDA 236

Query: 234 XXXXXXXXYFPPEEKHIDISKNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNCNCS 293
                   YFPPEEK IDISKNIRDRVHLEITMNSVCD GCKG+CLKCGQNFNTGNC+CS
Sbjct: 237 LIDLDDQLYFPPEEKQIDISKNIRDRVHLEITMNSVCDSGCKGVCLKCGQNFNTGNCSCS 296

Query: 294 --QVKEKSYGPLGNLKEK 309
             +VKE+S+GPL NL+E+
Sbjct: 297 KEEVKEESFGPLRNLREQ 314


>Medtr4g086490.1 | PPR containing plant protein | HC |
           chr4:33903624-33910415 | 20130731
          Length = 1183

 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/262 (54%), Positives = 156/262 (59%), Gaps = 35/262 (13%)

Query: 24  SNPQQKFTCNSFTRLRHRMISRCKTRHFCAP-FGNESSVVHKYATRSTNEG------SGV 76
           +N    F+CNSFT   HR +  CK RH     F  ES+V+HKY ++    G       G 
Sbjct: 16  NNSLTTFSCNSFTPFLHRTVPICKARHIGGVYFRTESNVLHKYVSKCKESGRDLYTEEGT 75

Query: 77  ISLDW---DDDGEIEDAGSPWEGAVIYKRNASILHLEYCTTLERLGLGNLSTDVSKSRAA 133
            S DW   +++   ED G PWEGAVIYKRNASILHLEYCTTLERL               
Sbjct: 76  TSFDWGDEEEEEIDEDEGLPWEGAVIYKRNASILHLEYCTTLERL--------------- 120

Query: 134 VMGLRVTKAVKDYPNGTPVQISIDVARKKKKLRLDGIIKTVIGLLCNRCCMPSAXXXXXX 193
                    VKD+PNG PVQISIDV RKKKKLRLDGIIKTV+ L+CNRCCMPSA      
Sbjct: 121 ---------VKDFPNGAPVQISIDVTRKKKKLRLDGIIKTVLTLVCNRCCMPSAESIFSE 171

Query: 194 XXXXXXXXPIV-EPETIDLGVIFGEDKITTSGXXXXXXXXXXXXXXXXXYFPPEEKHIDI 252
                   P V EPET+D GVIFGEDKI T G                 YFPPEEK IDI
Sbjct: 172 FSLLLTEEPPVNEPETMDFGVIFGEDKIPTLGKSGDDDEDALIDLDDQLYFPPEEKQIDI 231

Query: 253 SKNIRDRVHLEITMNSVCDPGC 274
           SKNIRDRVHLEITMNSVCD GC
Sbjct: 232 SKNIRDRVHLEITMNSVCDSGC 253