Miyakogusa Predicted Gene

Lj4g3v2604250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2604250.1 Non Characterized Hit- tr|C6TJQ3|C6TJQ3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40581 PE,88.48,0,pth:
peptidyl-tRNA hydrolase,Peptidyl-tRNA hydrolase;
Pept_tRNA_hydro_bact,Peptidyl-tRNA hydrolase; ,CUFF.51265.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g085910.1 | peptidyl-tRNA hydrolase family protein | HC | ...   400   e-112
Medtr7g082240.1 | group IIB intron splicing facilitator CRS2 | H...   258   3e-69
Medtr8g095500.1 | group IIB intron splicing facilitator CRS2 | H...   258   3e-69
Medtr8g103890.1 | peptidyl-tRNA hydrolase family protein | HC | ...   243   1e-64
Medtr8g103890.2 | peptidyl-tRNA hydrolase family protein | HC | ...   196   2e-50

>Medtr8g085910.1 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:35644897-35638468 | 20130731
          Length = 218

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/217 (88%), Positives = 203/217 (93%)

Query: 1   MLNRLSKRCFSTLAPRPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKA 60
           ML+ L+KR F T+APRPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGI M+ +H KA
Sbjct: 1   MLSTLTKRSFCTVAPRPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIAMDTVHCKA 60

Query: 61  IFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYD 120
           IFGKGFVG+VPVFLAKPQTYMNLSGES GPLAAYYK PLNQVLVFHDD+NLPCGVLRL D
Sbjct: 61  IFGKGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLND 120

Query: 121 KGGHGCHKGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQ 180
           KGGHG HKGLKSVIY+FR N EFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQ
Sbjct: 121 KGGHGSHKGLKSVIYNFRDNSEFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQ 180

Query: 181 EGVDALKILLSRGLEVSAKRFNKEQKYKHLRVQTLPV 217
           EGVDALK+LL  GLEVSAKRFNKEQKYKHL+VQTLPV
Sbjct: 181 EGVDALKLLLFIGLEVSAKRFNKEQKYKHLKVQTLPV 217


>Medtr7g082240.1 | group IIB intron splicing facilitator CRS2 | HC |
           chr7:31516457-31513834 | 20130731
          Length = 251

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 151/196 (77%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG+KY GTRHNVGFE+ID+ ++S+GI MN + SKA+ G G +GEVPV LAK
Sbjct: 56  PWLVVGLGNPGNKYHGTRHNVGFEIIDSLSQSEGILMNTIQSKALIGIGSIGEVPVLLAK 115

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQTYMN SGES GPLAAYY+ PL  +LV +D+ +LP GVL+L  KGGHG H GLK+VI H
Sbjct: 116 PQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSLPNGVLKLQPKGGHGHHNGLKNVIGH 175

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
             G+R+FPRL IGIG PPG MD +AFLLQKF+   R+++DE+L++GV A+K L+  G   
Sbjct: 176 LDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNH 235

Query: 197 SAKRFNKEQKYKHLRV 212
              RFN  QKYK+ +V
Sbjct: 236 HVNRFNLGQKYKYNKV 251


>Medtr8g095500.1 | group IIB intron splicing facilitator CRS2 | HC |
           chr8:39974720-39971088 | 20130731
          Length = 243

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 157/221 (71%), Gaps = 14/221 (6%)

Query: 6   SKRCFST--------------LAPRPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGI 51
           + RC+ST              L   PWL VGLGNPG+KY  TRHNVGFE+ID+ ++SQGI
Sbjct: 23  TPRCYSTKFSVRCSLPNGDNKLEYTPWLVVGLGNPGNKYHATRHNVGFEIIDSLSQSQGI 82

Query: 52  QMNELHSKAIFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNL 111
            MN + SKA+ G G +GEVPV LAKPQTYMN SGES GPLAAYY+ PL  +LV +D+ +L
Sbjct: 83  LMNTIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSL 142

Query: 112 PCGVLRLYDKGGHGCHKGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTA 171
           P GVL+L  KGGHG H GLK+VI H  G+R+FPRL IGIG PPG MD +AFLLQKF+   
Sbjct: 143 PSGVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVE 202

Query: 172 RQRIDEALQEGVDALKILLSRGLEVSAKRFNKEQKYKHLRV 212
           R+++DE+L++GV A++ L+  G      RFN  QKYK+ RV
Sbjct: 203 RKQVDESLEQGVQAVRTLVLNGFNHHVNRFNLGQKYKYNRV 243


>Medtr8g103890.1 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:43731565-43727004 | 20130731
          Length = 258

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 145/194 (74%)

Query: 16  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLA 75
            PWL VGLGNPG K+ GTRHNVGFEM+DA AE++GI M+ +  KA+FGKG++G+VPV LA
Sbjct: 63  EPWLIVGLGNPGKKFNGTRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGYIGDVPVILA 122

Query: 76  KPQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIY 135
           KPQT+MNLSGES G + +YYK PL QVLV  DDL+LP   LRL  KGGHG H G+KSVI 
Sbjct: 123 KPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVIN 182

Query: 136 HFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLE 195
           H +GN  FPRLRIGIG+PPG+MDP AF+L+ F    ++ ++  LQ+G++A++I+L  G +
Sbjct: 183 HLKGNSGFPRLRIGIGRPPGKMDPVAFVLRPFTKQEKEELNFTLQDGLEAVRIILLDGFD 242

Query: 196 VSAKRFNKEQKYKH 209
             A   N  +K + 
Sbjct: 243 KGATFVNSAKKMEQ 256


>Medtr8g103890.2 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:43731554-43728020 | 20130731
          Length = 202

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 106/134 (79%)

Query: 16  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLA 75
            PWL VGLGNPG K+ GTRHNVGFEM+DA AE++GI M+ +  KA+FGKG++G+VPV LA
Sbjct: 63  EPWLIVGLGNPGKKFNGTRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGYIGDVPVILA 122

Query: 76  KPQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIY 135
           KPQT+MNLSGES G + +YYK PL QVLV  DDL+LP   LRL  KGGHG H G+KSVI 
Sbjct: 123 KPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVIN 182

Query: 136 HFRGNREFPRLRIG 149
           H +GN  FPRLRIG
Sbjct: 183 HLKGNSGFPRLRIG 196