Miyakogusa Predicted Gene

Lj4g3v2603860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603860.1 Non Characterized Hit- tr|H3JFB7|H3JFB7_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,34.04,0.00000000000002,Med10,Mediator complex, subunit Med10;
seg,NULL; NUT2,NULL; NUT2 AND UXT,NULL,CUFF.51220.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g085570.3 | mediator of RNA polymerase II transcription su...   238   3e-63
Medtr8g085570.1 | mediator of RNA polymerase II transcription su...   238   3e-63
Medtr8g085570.4 | mediator of RNA polymerase II transcription su...   238   3e-63
Medtr8g085570.2 | mediator of RNA polymerase II transcription su...   238   3e-63

>Medtr8g085570.3 | mediator of RNA polymerase II transcription
           subunit 10 | HC | chr8:35445825-35440421 | 20130731
          Length = 186

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 124/154 (80%)

Query: 41  IQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCNVQ 100
           +Q L Q+  SI++TLG+IHQL LTVST+N+A QMPLLQRIN LV ELD MVKLAEKCN+Q
Sbjct: 33  MQNLSQISNSIEKTLGLIHQLSLTVSTFNSALQMPLLQRINGLVAELDNMVKLAEKCNIQ 92

Query: 101 VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDEVE 160
           VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKD RKHL EELEQNFPDEVE
Sbjct: 93  VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDLRKHLLEELEQNFPDEVE 152

Query: 161 TFRESXXXXXXXXXXXXXXXSALPNGDVRVKAEH 194
           TFRE+               S LPNGD R K EH
Sbjct: 153 TFRENRAAAAAELKRLAQAPSVLPNGDARAKVEH 186


>Medtr8g085570.1 | mediator of RNA polymerase II transcription
           subunit 10 | HC | chr8:35445825-35440421 | 20130731
          Length = 186

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 124/154 (80%)

Query: 41  IQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCNVQ 100
           +Q L Q+  SI++TLG+IHQL LTVST+N+A QMPLLQRIN LV ELD MVKLAEKCN+Q
Sbjct: 33  MQNLSQISNSIEKTLGLIHQLSLTVSTFNSALQMPLLQRINGLVAELDNMVKLAEKCNIQ 92

Query: 101 VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDEVE 160
           VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKD RKHL EELEQNFPDEVE
Sbjct: 93  VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDLRKHLLEELEQNFPDEVE 152

Query: 161 TFRESXXXXXXXXXXXXXXXSALPNGDVRVKAEH 194
           TFRE+               S LPNGD R K EH
Sbjct: 153 TFRENRAAAAAELKRLAQAPSVLPNGDARAKVEH 186


>Medtr8g085570.4 | mediator of RNA polymerase II transcription
           subunit 10 | HC | chr8:35445825-35440421 | 20130731
          Length = 186

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 124/154 (80%)

Query: 41  IQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCNVQ 100
           +Q L Q+  SI++TLG+IHQL LTVST+N+A QMPLLQRIN LV ELD MVKLAEKCN+Q
Sbjct: 33  MQNLSQISNSIEKTLGLIHQLSLTVSTFNSALQMPLLQRINGLVAELDNMVKLAEKCNIQ 92

Query: 101 VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDEVE 160
           VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKD RKHL EELEQNFPDEVE
Sbjct: 93  VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDLRKHLLEELEQNFPDEVE 152

Query: 161 TFRESXXXXXXXXXXXXXXXSALPNGDVRVKAEH 194
           TFRE+               S LPNGD R K EH
Sbjct: 153 TFRENRAAAAAELKRLAQAPSVLPNGDARAKVEH 186


>Medtr8g085570.2 | mediator of RNA polymerase II transcription
           subunit 10 | HC | chr8:35445825-35440421 | 20130731
          Length = 186

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 124/154 (80%)

Query: 41  IQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCNVQ 100
           +Q L Q+  SI++TLG+IHQL LTVST+N+A QMPLLQRIN LV ELD MVKLAEKCN+Q
Sbjct: 33  MQNLSQISNSIEKTLGLIHQLSLTVSTFNSALQMPLLQRINGLVAELDNMVKLAEKCNIQ 92

Query: 101 VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDEVE 160
           VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKD RKHL EELEQNFPDEVE
Sbjct: 93  VPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDLRKHLLEELEQNFPDEVE 152

Query: 161 TFRESXXXXXXXXXXXXXXXSALPNGDVRVKAEH 194
           TFRE+               S LPNGD R K EH
Sbjct: 153 TFRENRAAAAAELKRLAQAPSVLPNGDARAKVEH 186