Miyakogusa Predicted Gene

Lj4g3v2603760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603760.1 tr|G7LHV5|G7LHV5_MEDTR Small ubiquitin-related
modifier OS=Medicago truncatula GN=MTR_8g085320 PE=4 ,46.32,1e-16,no
description,NULL; Rad60-SLD,Small ubiquitin-related modifier, SUMO;
Ubiquitin-like,NULL,gene.g57057.t1.1
         (102 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g085340.1 | ubiquitin-like Rad60 SUMO-like protein | LC | ...   103   3e-23
Medtr8g085320.1 | ubiquitin-like Rad60 SUMO-like protein | HC | ...    92   1e-19
Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC | chr3:21...    77   3e-15
Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC | chr3:21...    77   5e-15
Medtr8g010490.1 | small ubiquitin-like modifier 3 | LC | chr8:27...    58   2e-09
Medtr1g041420.1 | hypothetical protein | LC | chr1:15492571-1549...    56   6e-09
Medtr8g010480.1 | small ubiquitin-like modifier 3 | LC | chr8:27...    49   9e-07

>Medtr8g085340.1 | ubiquitin-like Rad60 SUMO-like protein | LC |
           chr8:35354791-35353457 | 20130731
          Length = 131

 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 1   MGSSSQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEY 60
           +G+  + S+R   TE+     ++ F I+GQDG +  FKVN++  L  AF  YC+++ L+Y
Sbjct: 7   LGNKRKASERDEVTEDG--IVHIEFGIRGQDGNEQHFKVNQDKFLITAFQQYCKKMKLQY 64

Query: 61  ETMQFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGGVA 102
            T+ FL D + ++G RQTPKMLNLKNGD I A++HQSGGGV 
Sbjct: 65  ATINFLLDEKSIQGNRQTPKMLNLKNGDTIDAMKHQSGGGVV 106


>Medtr8g085320.1 | ubiquitin-like Rad60 SUMO-like protein | HC |
           chr8:35344880-35341163 | 20130731
          Length = 104

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 3/95 (3%)

Query: 9   KRKAPTEEAGPAD---YVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQF 65
           KRKA   +   +D    ++FSI+ QDG ++FFKVN +  L   F  YC++ NLEYET+ F
Sbjct: 6   KRKASERDEISSDDSVRINFSIRAQDGSRVFFKVNPDRYLKIPFKKYCQKSNLEYETVTF 65

Query: 66  LHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGG 100
           L +G+ + G RQTP+ L LKNG EI  ++ Q+GGG
Sbjct: 66  LLEGKRINGNRQTPRTLKLKNGAEIDVMKQQTGGG 100


>Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC |
           chr3:21271713-21269094 | 20130731
          Length = 101

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 66/98 (67%), Gaps = 2/98 (2%)

Query: 4   SSQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETM 63
           ++ P+  +    EAG A +++  +KGQDG ++FF++ +  +L    ++YC+R ++++ ++
Sbjct: 5   AAAPNNEEDKKPEAGGA-HINLKVKGQDGNEVFFRIKRNTQLKKLMNAYCDRQSVDFNSI 63

Query: 64  QFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGGV 101
            FL DG+ ++ + QTP  L +++GDEI A+ HQ+GG V
Sbjct: 64  AFLFDGRRLRAE-QTPDELEMEDGDEIDAMLHQTGGSV 100


>Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC |
           chr3:21293436-21291225 | 20130731
          Length = 101

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 4   SSQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETM 63
           ++ P+  +    EAG A +++  +KGQDG ++FF++ +  +L    ++YC+R ++++  +
Sbjct: 5   AAAPNTEEDKKPEAGGA-HINLKVKGQDGNEVFFRIKRNTQLKKLMNAYCDRQSVDFNAI 63

Query: 64  QFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGGV 101
            FL DG+ ++ + QTP  L +++GDEI A+ HQ+GG V
Sbjct: 64  AFLFDGRRLRAE-QTPDELEMEDGDEIDAMLHQTGGSV 100


>Medtr8g010490.1 | small ubiquitin-like modifier 3 | LC |
           chr8:2738631-2736144 | 20130731
          Length = 188

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 3   SSSQPSKRKAPTEEA--GPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEY 60
           S+  PS      EE    P +Y++  +K  D  +L+F++ K  ++     SYC+R  L++
Sbjct: 7   SNETPSVITNDVEEIEPQPTNYINLHVKDTDDIKLYFRLKKTTQMRKLMDSYCDRNALDF 66

Query: 61  ETMQFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQ 96
             M FL +G+ +    QTP  L+L++ D I AV HQ
Sbjct: 67  YLMVFLFNGRRIY-PHQTPYELDLEDDDAIDAVLHQ 101



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 23  VHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQTPKML 82
           ++  +KGQDG Q  F++ K A L      YC +  L+   +  L +G Y+    QTP  L
Sbjct: 108 INIKVKGQDGFQASFRIRKSAALKKLMDQYCYQYCLDVNGVGLLFNG-YLVQPEQTPFEL 166

Query: 83  NLKNGDEIVAVRHQSGG 99
            +++GDE++A+ H   G
Sbjct: 167 GIEDGDEMLAMLHLRTG 183


>Medtr1g041420.1 | hypothetical protein | LC |
           chr1:15492571-15493454 | 20130731
          Length = 93

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 52  YCERVNLEYETMQFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGGVA 102
           YC++ NLEYET+ FL + + +   RQT +ML L+NG EI  ++ Q+GGG A
Sbjct: 3   YCQQSNLEYETVTFLLERKRINENRQTSRMLKLENGAEIDGMKQQTGGGDA 53


>Medtr8g010480.1 | small ubiquitin-like modifier 3 | LC |
           chr8:2725287-2721462 | 20130731
          Length = 319

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 25  FSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQTPKMLNL 84
             +K QDG ++FF +NK   L    ++YC   ++++ ++ F+ +  +V+ + Q+P  + +
Sbjct: 169 LKVKCQDGNEIFFSINKSTHLKKLMNAYCNHHSVDFNSIGFMFNEHHVQAE-QSPNEMQM 227

Query: 85  KNGDEIVAV 93
            +GDEI A+
Sbjct: 228 VDGDEIDAI 236



 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 23  VHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQTPKML 82
           ++  +KGQ G +  F +N+  +L      YC R   +++ + FL +G  V+ + QTP  L
Sbjct: 244 INLKVKGQVGFEASFGINRSTRLKKLMDVYCCRYCFDFDGVAFLFNGCLVESE-QTPDEL 302

Query: 83  NLKNGDEIVAV 93
            ++NGDE++A+
Sbjct: 303 GMENGDEMLAM 313