Miyakogusa Predicted Gene

Lj4g3v2577140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2577140.1 Non Characterized Hit- tr|E0VHT4|E0VHT4_PEDHC
Putative uncharacterized protein OS=Pediculus humanus
,26.06,0.0000006,seg,NULL; Med18,Mediator complex, subunit Med18,
metazoa/fungi,CUFF.51164.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g438770.1 | mediator of RNA polymerase II transcription su...   285   2e-77
Medtr5g044730.1 | mediator of RNA polymerase II transcription su...   261   3e-70

>Medtr2g438770.1 | mediator of RNA polymerase II transcription
           subunit 18 | HC | chr2:15688067-15683753 | 20130731
          Length = 217

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 145/154 (94%)

Query: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKNGPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHE+CLKNGP+LG V+SEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHELCLKNGPHLGPVSSEVRLLCDLEQ 60

Query: 61  AEPSWTVKHIGGPIRGAGADQISVLVRNMVESKASKNVLRMFYTLGYKLDHELLRVGFSF 120
            EPSWTV+H+GG +RGAGADQISVLVR MVESK SKNVLRMFYTLGYKLDHELLRVGFSF
Sbjct: 61  TEPSWTVRHVGGAMRGAGADQISVLVRTMVESKVSKNVLRMFYTLGYKLDHELLRVGFSF 120

Query: 121 QFYRGAQITVTVSSINKMPKLHATDEAEPVTPGI 154
           +F RGAQITV VSS+NKM KLHATDEA PVTPGI
Sbjct: 121 KFNRGAQITVRVSSVNKMLKLHATDEAVPVTPGI 154


>Medtr5g044730.1 | mediator of RNA polymerase II transcription
           subunit 18 | HC | chr5:19638471-19636207 | 20130731
          Length = 225

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 133/143 (93%)

Query: 12  QHVEALEILLQGLCGVQRERLRIHEICLKNGPNLGNVASEVRLLCDLEQAEPSWTVKHIG 71
           QHVEALEILLQGLCGVQRERLRIHE+CLKNGP+LG V+SEVRLLCDLEQ EPSW V+H+G
Sbjct: 20  QHVEALEILLQGLCGVQRERLRIHELCLKNGPHLGPVSSEVRLLCDLEQTEPSWAVRHVG 79

Query: 72  GPIRGAGADQISVLVRNMVESKASKNVLRMFYTLGYKLDHELLRVGFSFQFYRGAQITVT 131
           G +RGAGADQISVLVR MVESK SKNVLRMFYTLGYKLDHELLRVGFSF+F RGAQITV 
Sbjct: 80  GAMRGAGADQISVLVRTMVESKVSKNVLRMFYTLGYKLDHELLRVGFSFKFKRGAQITVR 139

Query: 132 VSSINKMPKLHATDEAEPVTPGI 154
           VSS+NKM KLHATDEA PVTPGI
Sbjct: 140 VSSVNKMLKLHATDEAVPVTPGI 162