Miyakogusa Predicted Gene

Lj4g3v2573940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2573940.1 Non Characterized Hit- tr|I1K3P5|I1K3P5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.3,2e-38,Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; snRNP Sm
proteins,Ribonucleoprotein LSM domain, euk,CUFF.51149.1
         (94 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...   168   1e-42
Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   155   7e-39
Medtr7g104930.1 | small nuclear ribonucleoprotein | HC | chr7:42...    56   9e-09

>Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:23716677-23712044 | 20130731
          Length = 99

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 88/94 (93%), Gaps = 1/94 (1%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPL+ 
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRHLGFIVCRGTAVMLVSPTDGTEVIVDNPF 94
          TDQTR LG IVCRGTAVMLVSPTDGT+ I  NPF
Sbjct: 61 TDQTRSLGLIVCRGTAVMLVSPTDGTDEIA-NPF 93


>Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:13385203-13381118 | 20130731
          Length = 124

 Score =  155 bits (392), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 80/86 (93%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNL LDEAVEFLRDPDDPL+ 
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLFLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRHLGFIVCRGTAVMLVSPTDGT 86
          TDQTR LG I CRGTAVMLVSPTD T
Sbjct: 61 TDQTRSLGLIGCRGTAVMLVSPTDVT 86


>Medtr7g104930.1 | small nuclear ribonucleoprotein | HC |
          chr7:42544003-42542017 | 20130731
          Length = 80

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL   R + GTL+G+DQ +NLV+D  VE            ++   +G 
Sbjct: 9  DLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVN---------GNEKNDIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +V+ V
Sbjct: 60 VVIRGNSVVTV 70