Miyakogusa Predicted Gene

Lj4g3v2563550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2563550.1 tr|A9RTM1|A9RTM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_205447,66.18,4e-19,SUBFAMILY NOT NAMED,NULL; STRESS
ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4),Endoplasmic
,CUFF.51123.1
         (68 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080750.1 | viral movement protein | HC | chr8:34758779-34...    64   3e-11

>Medtr8g080750.1 | viral movement protein | HC |
           chr8:34758779-34756153 | 20130731
          Length = 266

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/36 (86%), Positives = 32/36 (88%)

Query: 1   MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDY 36
           MTTS+RLA RKVEKFEKNITKRG VPETT KKG DY
Sbjct: 181 MTTSKRLAVRKVEKFEKNITKRGSVPETTVKKGNDY 216