Miyakogusa Predicted Gene

Lj4g3v2551480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2551480.1 tr|A8I9X7|A8I9X7_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_141205 PE=4
SV=1,32.95,2e-18,seg,NULL; DUF493,Uncharacterised protein family
UPF0250; YbeD-like,NULL,CUFF.51118.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085280.1 | DUF493 family protein | HC | chr3:38539441-385...   282   2e-76

>Medtr3g085280.1 | DUF493 family protein | HC |
           chr3:38539441-38536068 | 20130731
          Length = 205

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/210 (71%), Positives = 162/210 (77%), Gaps = 20/210 (9%)

Query: 38  MACRGML----VVEPFPIF-------QRFCLNLNPNNHR--RTFKFNPRPFQFHGANGGG 84
           MACR ML    +VEP           +    NL PN     R      RPF      G G
Sbjct: 1   MACRSMLRSAMIVEPLQFQFQFQFQFKPLLFNLKPNKRGGFRCRTIKARPFH----RGNG 56

Query: 85  ALRCSHDETPS--FQDDQGGPPQEAVLKAISEVSKTEGRVGQTTNMVIGGTVTDDSTNEW 142
            LRCS ++TPS  F DDQG PPQEAVLKAISEVSKTEGR+GQTTNMVIGGTVTDDSTNEW
Sbjct: 57  VLRCSRNDTPSSSFHDDQG-PPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEW 115

Query: 143 LALDQKVNSYPTNRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGRVKQKLSARGKYVSV 202
           +ALD+KVN+YPT RGFTAIGTGG+DFVQAMVVAVESVIQQPIPQG VK K+SARGKYVSV
Sbjct: 116 VALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSV 175

Query: 203 NIGPIQVVSSEQVQAVYNAMRRDDRMKYFL 232
           NIGP+QVVSSEQVQAVYNAMRRDDRMKYFL
Sbjct: 176 NIGPVQVVSSEQVQAVYNAMRRDDRMKYFL 205