Miyakogusa Predicted Gene
- Lj4g3v2539190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2539190.1 tr|F2CYX2|F2CYX2_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,42.28,4e-17,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain;
WD_REPEATS_REGION,WD40-rep,gene.g56951.t1.1
(254 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g084650.1 | SEC12p-like protein | HC | chr4:32970884-32978... 354 4e-98
Medtr4g084650.2 | SEC12p-like protein | HC | chr4:32970895-32977... 349 1e-96
Medtr1g090873.2 | SEC12p-like protein | HC | chr1:40944143-40938... 126 2e-29
Medtr1g090873.1 | SEC12p-like protein | HC | chr1:40944143-40938... 125 3e-29
>Medtr4g084650.1 | SEC12p-like protein | HC | chr4:32970884-32978413
| 20130731
Length = 411
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 208/273 (76%), Gaps = 39/273 (14%)
Query: 19 RWFDWDLNKNSEIHQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKW 78
RWFDWD N+++EIH+LGLK SEK+LTQL++VG QLALAFNNDGT LAAGGEDG L+VFKW
Sbjct: 132 RWFDWDQNEDAEIHKLGLKVSEKLLTQLDNVGQQLALAFNNDGTTLAAGGEDGSLRVFKW 191
Query: 79 PSMEIILNEPNAHSTVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFS 138
PSME ILNE NAHSTVKDLHFSSDGK IVSLG GGPCRVWDVSS+IVLA+L+NENRE FS
Sbjct: 192 PSMENILNESNAHSTVKDLHFSSDGKLIVSLGGGGPCRVWDVSSAIVLATLANENRENFS 251
Query: 139 ACRFSQTNDSTRVLYIAAMADNR-GSILTWNTPTWERMGSN------------------- 178
+CRFSQTND T+VLYIAA D GSI+TWNT TWER+ S
Sbjct: 252 SCRFSQTNDGTQVLYIAARTDKGFGSIVTWNTQTWERISSKHILRDPICAFNVSADGKFL 311
Query: 179 --GTPSGDIVIVSSTNMQIQTMVKKAHIGIVTALAFSPDSRLRALASVSWDSSARVTIIE 236
GTP GDIVIV+STNMQIQTM+KKAH+G+VTALAFSPDS RALASVS DSSARVTIIE
Sbjct: 312 ACGTPEGDIVIVNSTNMQIQTMIKKAHLGVVTALAFSPDS--RALASVSMDSSARVTIIE 369
Query: 237 EKNKSA---------------AAYFLKVERIDK 254
EK AA FLKVE I+K
Sbjct: 370 EKKNGGGLSLWIAIFIFLLAIAASFLKVEGIEK 402
>Medtr4g084650.2 | SEC12p-like protein | HC | chr4:32970895-32977769
| 20130731
Length = 375
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/242 (73%), Positives = 198/242 (81%), Gaps = 24/242 (9%)
Query: 19 RWFDWDLNKNSEIHQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKW 78
RWFDWD N+++EIH+LGLK SEK+LTQL++VG QLALAFNNDGT LAAGGEDG L+VFKW
Sbjct: 132 RWFDWDQNEDAEIHKLGLKVSEKLLTQLDNVGQQLALAFNNDGTTLAAGGEDGSLRVFKW 191
Query: 79 PSMEIILNEPNAHSTVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFS 138
PSME ILNE NAHSTVKDLHFSSDGK IVSLG GGPCRVWDVSS+IVLA+L+NENRE FS
Sbjct: 192 PSMENILNESNAHSTVKDLHFSSDGKLIVSLGGGGPCRVWDVSSAIVLATLANENRENFS 251
Query: 139 ACRFSQTNDSTRVLYIAAMADNR-GSILTWNTPTWERMGSN------------------- 178
+CRFSQTND T+VLYIAA D GSI+TWNT TWER+ S
Sbjct: 252 SCRFSQTNDGTQVLYIAARTDKGFGSIVTWNTQTWERISSKHILRDPICAFNVSADGKFL 311
Query: 179 --GTPSGDIVIVSSTNMQIQTMVKKAHIGIVTALAFSPDSRLRALASVSWDSSARVTIIE 236
GTP GDIVIV+STNMQIQTM+KKAH+G+VTALAFSPDS RALASVS DSSARVTIIE
Sbjct: 312 ACGTPEGDIVIVNSTNMQIQTMIKKAHLGVVTALAFSPDS--RALASVSMDSSARVTIIE 369
Query: 237 EK 238
EK
Sbjct: 370 EK 371
>Medtr1g090873.2 | SEC12p-like protein | HC | chr1:40944143-40938677
| 20130731
Length = 352
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 32 HQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKWPSMEIILNEPNAH 91
H+ +K K LT L+ + Q + F+ DG+ AAGG DG L++ +WPSM IIL+EP AH
Sbjct: 100 HEANMKLLAKELTPLQGICSQTCITFSVDGSKFAAGGSDGHLRIMEWPSMRIILDEPRAH 159
Query: 92 STVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFSACRFSQTNDSTR- 150
+V+D+ FS D +++ S + G R+W V + + +LS + E CRFS+ D T+
Sbjct: 160 KSVRDMDFSLDSEFLASTSTDGSARIWKVEDGVPVTTLSRNSDEKIELCRFSK--DGTKP 217
Query: 151 VLYIAAMADNRGSILTWNTPTWERMG---------------------SNGTPSGDIVIVS 189
L+ A ++ W+ +W ++G S + GDI +V
Sbjct: 218 FLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLRKSASAMAVSHDGKYLSLASKDGDICVVE 277
Query: 190 STNMQIQTMVKKAHIGIVTA-LAFSPDSRLRALASVSW 226
MQI K+ H+G A L F P R+ SV W
Sbjct: 278 VKKMQIHHYSKRLHLGTTIATLDFCPSERVVLTTSVEW 315
>Medtr1g090873.1 | SEC12p-like protein | HC | chr1:40944143-40938677
| 20130731
Length = 392
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 32 HQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKWPSMEIILNEPNAH 91
H+ +K K LT L+ + Q + F+ DG+ AAGG DG L++ +WPSM IIL+EP AH
Sbjct: 100 HEANMKLLAKELTPLQGICSQTCITFSVDGSKFAAGGSDGHLRIMEWPSMRIILDEPRAH 159
Query: 92 STVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFSACRFSQTNDSTR- 150
+V+D+ FS D +++ S + G R+W V + + +LS + E CRFS+ D T+
Sbjct: 160 KSVRDMDFSLDSEFLASTSTDGSARIWKVEDGVPVTTLSRNSDEKIELCRFSK--DGTKP 217
Query: 151 VLYIAAMADNRGSILTWNTPTWERMG---------------------SNGTPSGDIVIVS 189
L+ A ++ W+ +W ++G S + GDI +V
Sbjct: 218 FLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLRKSASAMAVSHDGKYLSLASKDGDICVVE 277
Query: 190 STNMQIQTMVKKAHIGIVTA-LAFSPDSRLRALASVSW 226
MQI K+ H+G A L F P R+ SV W
Sbjct: 278 VKKMQIHHYSKRLHLGTTIATLDFCPSERVVLTTSVEW 315