Miyakogusa Predicted Gene
- Lj4g3v2526060.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2526060.2 Non Characterized Hit- tr|I1R7U0|I1R7U0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,31.86,3e-18,Remorin_C,Remorin, C-terminal; seg,NULL;
coiled-coil,NULL; FAMILY NOT NAMED,NULL,CUFF.51093.2
(348 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g080180.2 | carboxy-terminal region remorin | HC | chr8:34... 359 2e-99
Medtr8g080180.1 | carboxy-terminal region remorin | HC | chr8:34... 359 2e-99
Medtr8g079482.2 | carboxy-terminal region remorin | HC | chr8:34... 79 4e-15
Medtr8g079482.1 | carboxy-terminal region remorin | HC | chr8:34... 79 5e-15
Medtr7g091990.1 | carboxy-terminal region remorin | HC | chr7:36... 59 7e-09
Medtr1g052560.1 | carboxy-terminal region remorin | HC | chr1:21... 55 7e-08
Medtr1g019280.1 | carboxy-terminal region remorin | HC | chr1:57... 55 8e-08
Medtr1g019280.2 | carboxy-terminal region remorin | HC | chr1:57... 55 9e-08
>Medtr8g080180.2 | carboxy-terminal region remorin | HC |
chr8:34442403-34445750 | 20130731
Length = 361
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 235/387 (60%), Gaps = 65/387 (16%)
Query: 1 MKYVEDKEI--SNSSAVMHHSEFQNGKNAA------------RVSNHRHRITNGKPTPSK 46
MK+VEDK +N SA + GK+ RVSNH HRI GKPTPSK
Sbjct: 1 MKFVEDKGCYSNNGSAA---QDTHKGKDTTTGTAAAAATTTTRVSNH-HRINMGKPTPSK 56
Query: 47 WDDAQKWLVGLXXXXXXXXXXXXXXXXPRNSNADDLRLIAPVPQKEQDYSSSEKEEEDQE 106
WDDAQKWLVGL PRNSNADDLRLIAPVPQKE E+ +
Sbjct: 57 WDDAQKWLVGLSKGGEKGQSKSK----PRNSNADDLRLIAPVPQKE----------EEHD 102
Query: 107 HDVCHDFITTTTSD-DAETNKYVS------------------EHTLVPVQSLCFRDMGTE 147
D CHDF+TTT+S+ +AE +K V + VQS+CFRDMGTE
Sbjct: 103 DDGCHDFMTTTSSEYEAEDSKKVECDDESIWRMNNNSKVLAENKNTIHVQSICFRDMGTE 162
Query: 148 MTPIASQEXXXXXXXXXXXXXXXXXXIHSGTSTPMKGQNGLDNKGAAEGGSVSSRGNNGT 207
MTPIASQE IHSGTSTPM+ QNGL AA G NNG+
Sbjct: 163 MTPIASQEPSRTATPIRATTPTTRSPIHSGTSTPMRNQNGLLQMEAASG-------NNGS 215
Query: 208 ITRQCCGGEGS------EKKIEDQAKKLSPLESRAIAWDEAERAKFMARFKREEVKIQAW 261
TRQC G E S + KIEDQA+KLSPLESRA+AWDEAERAK+MARFKREE+KIQAW
Sbjct: 216 TTRQC-GEESSPCKMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAW 274
Query: 262 ENHQIXXXXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTT 321
ENHQI +AQE+ TNKLA T+RIAEEKRANAQV+L D AL+TT
Sbjct: 275 ENHQIRKAEMEMKKMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTT 334
Query: 322 ERVEYIRRTGHVPSSFSFNFKLPSICW 348
ERV+YIRRTGHVPSSFSF FKLPSICW
Sbjct: 335 ERVDYIRRTGHVPSSFSFTFKLPSICW 361
>Medtr8g080180.1 | carboxy-terminal region remorin | HC |
chr8:34442437-34445750 | 20130731
Length = 361
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 209/387 (54%), Positives = 235/387 (60%), Gaps = 65/387 (16%)
Query: 1 MKYVEDKEI--SNSSAVMHHSEFQNGKNAA------------RVSNHRHRITNGKPTPSK 46
MK+VEDK +N SA + GK+ RVSNH HRI GKPTPSK
Sbjct: 1 MKFVEDKGCYSNNGSAA---QDTHKGKDTTTGTAAAAATTTTRVSNH-HRINMGKPTPSK 56
Query: 47 WDDAQKWLVGLXXXXXXXXXXXXXXXXPRNSNADDLRLIAPVPQKEQDYSSSEKEEEDQE 106
WDDAQKWLVGL PRNSNADDLRLIAPVPQKE E+ +
Sbjct: 57 WDDAQKWLVGLSKGGEKGQSKSK----PRNSNADDLRLIAPVPQKE----------EEHD 102
Query: 107 HDVCHDFITTTTSD-DAETNKYVS------------------EHTLVPVQSLCFRDMGTE 147
D CHDF+TTT+S+ +AE +K V + VQS+CFRDMGTE
Sbjct: 103 DDGCHDFMTTTSSEYEAEDSKKVECDDESIWRMNNNSKVLAENKNTIHVQSICFRDMGTE 162
Query: 148 MTPIASQEXXXXXXXXXXXXXXXXXXIHSGTSTPMKGQNGLDNKGAAEGGSVSSRGNNGT 207
MTPIASQE IHSGTSTPM+ QNGL AA G NNG+
Sbjct: 163 MTPIASQEPSRTATPIRATTPTTRSPIHSGTSTPMRNQNGLLQMEAASG-------NNGS 215
Query: 208 ITRQCCGGEGS------EKKIEDQAKKLSPLESRAIAWDEAERAKFMARFKREEVKIQAW 261
TRQC G E S + KIEDQA+KLSPLESRA+AWDEAERAK+MARFKREE+KIQAW
Sbjct: 216 TTRQC-GEESSPCKMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAW 274
Query: 262 ENHQIXXXXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTT 321
ENHQI +AQE+ TNKLA T+RIAEEKRANAQV+L D AL+TT
Sbjct: 275 ENHQIRKAEMEMKKMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTT 334
Query: 322 ERVEYIRRTGHVPSSFSFNFKLPSICW 348
ERV+YIRRTGHVPSSFSF FKLPSICW
Sbjct: 335 ERVDYIRRTGHVPSSFSFTFKLPSICW 361
>Medtr8g079482.2 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 438
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 99/248 (39%), Gaps = 33/248 (13%)
Query: 121 DAETNKYVSEHTLVP-VQSLCFRDMGTEMTPIASQEXXXXXXXXXXXXXXXXXXIHSGTS 179
D+ + + T P ++S+ RDMGTEMTP+ SQE S S
Sbjct: 183 DSSCTTSIDDQTAFPGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSP-TSSMPS 241
Query: 180 TPMKGQNGLDNKGAAEGGSVSSRGNNG----------TITRQCCGGEGSE---------- 219
TP +G G R N TR+ G +
Sbjct: 242 TPRRGAPAPTPLGYTTDEDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMNIAAWA 301
Query: 220 KKIEDQAKKLS-----------PLESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXX 268
K ++++KK E RA W+EAE++K AR KREE++IQAWE+ Q
Sbjct: 302 SKDDEESKKAGRDADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAK 361
Query: 269 XXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIR 328
+ K+A ++ ++EKRA A+ +A +T + EYIR
Sbjct: 362 LEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIR 421
Query: 329 RTGHVPSS 336
+TG +P S
Sbjct: 422 QTGKMPYS 429
>Medtr8g079482.1 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 528
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 99/248 (39%), Gaps = 33/248 (13%)
Query: 121 DAETNKYVSEHTLVP-VQSLCFRDMGTEMTPIASQEXXXXXXXXXXXXXXXXXXIHSGTS 179
D+ + + T P ++S+ RDMGTEMTP+ SQE S S
Sbjct: 273 DSSCTTSIDDQTAFPGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSP-TSSMPS 331
Query: 180 TPMKGQNGLDNKGAAEGGSVSSRGNNG----------TITRQCCGGEGSE---------- 219
TP +G G R N TR+ G +
Sbjct: 332 TPRRGAPAPTPLGYTTDEDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMNIAAWA 391
Query: 220 KKIEDQAKKLS-----------PLESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXX 268
K ++++KK E RA W+EAE++K AR KREE++IQAWE+ Q
Sbjct: 392 SKDDEESKKAGRDADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAK 451
Query: 269 XXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIR 328
+ K+A ++ ++EKRA A+ +A +T + EYIR
Sbjct: 452 LEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIR 511
Query: 329 RTGHVPSS 336
+TG +P S
Sbjct: 512 QTGKMPYS 519
>Medtr7g091990.1 | carboxy-terminal region remorin | HC |
chr7:36403616-36400654 | 20130731
Length = 279
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%)
Query: 198 SVSSRGNNGTITRQCCGGEGSEKKIEDQAKKLSPLESRAIAWDEAERAKFMARFKREEVK 257
S +SR N + + + G GSE+ + K ++++ AW A+ AK RFKR++
Sbjct: 137 SPTSRRNMASGSSRASGQGGSEEHVSVDRVKKEEVDAKISAWQNAKVAKINNRFKRDDAV 196
Query: 258 IQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQA 317
I WE+ Q+ A E+ NK+A +R AEE++A+A+ + +
Sbjct: 197 INGWESEQVQKATSWMKKVERKLEEKRARALEKTQNKIAKARRKAEERKASAEAKRGTKV 256
Query: 318 LKTTERVEYIRRTGHVPSSFSF 339
+ E +R G P+ SF
Sbjct: 257 ARVLEIANLMRAVGRPPAKKSF 278
>Medtr1g052560.1 | carboxy-terminal region remorin | HC |
chr1:21429641-21426963 | 20130731
Length = 273
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%)
Query: 232 LESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERF 291
+ES+ AW A+ AK RFKRE+ I WEN Q+ A E+
Sbjct: 165 VESKIAAWQNAKVAKVNNRFKREDAVINGWENEQVQKANSWMMKVERKLEEKRAKALEKM 224
Query: 292 TNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVPSSFSF 339
N +A R A+EKRA+A+ + + + E +R G PS SF
Sbjct: 225 QNDVAKAHRKAQEKRASAEAKRGTKISRVLEIANLMRVVGRAPSKRSF 272
>Medtr1g019280.1 | carboxy-terminal region remorin | HC |
chr1:5782200-5777571 | 20130731
Length = 620
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 215 GEGSEKKIEDQAKKLSPLESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXX 274
G GSE ++ KK + +R+ +W+ +ER+K +++ KREE KI AWEN Q
Sbjct: 493 GRGSEN-VDSWKKKET--STRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAIQ 549
Query: 275 XXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVP 334
+ ++ NKL ++ A+E R++ V+ Q +T+ +V RR G +
Sbjct: 550 KLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSFRRAGQMG 609
Query: 335 S 335
S
Sbjct: 610 S 610
>Medtr1g019280.2 | carboxy-terminal region remorin | HC |
chr1:5781751-5777571 | 20130731
Length = 558
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 215 GEGSEKKIEDQAKKLSPLESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXX 274
G GSE ++ KK + +R+ +W+ +ER+K +++ KREE KI AWEN Q
Sbjct: 431 GRGSEN-VDSWKKKET--STRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAIQ 487
Query: 275 XXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVP 334
+ ++ NKL ++ A+E R++ V+ Q +T+ +V RR G +
Sbjct: 488 KLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSFRRAGQMG 547
Query: 335 S 335
S
Sbjct: 548 S 548