Miyakogusa Predicted Gene

Lj4g3v2523910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2523910.1 Non Characterized Hit- tr|B9G107|B9G107_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.5,9e-18,LEUCINE RICH REPEAT FAMILY PROTEIN,NULL;
F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL; no
description,NULL,CUFF.51101.1
         (502 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080000.1 | F-box SKIP28-like protein | HC | chr8:34350638...   579   e-165
Medtr8g104920.1 | F-box SKIP28-like protein | HC | chr8:44233342...   174   3e-43

>Medtr8g080000.1 | F-box SKIP28-like protein | HC |
           chr8:34350638-34354636 | 20130731
          Length = 575

 Score =  579 bits (1492), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 334/568 (58%), Positives = 380/568 (66%), Gaps = 100/568 (17%)

Query: 1   MALNLSRRSFFA---DEDNLRMGNGYRVEGKKPEMSGGGGDSFGKV-----WPGVENPF- 51
           MALN S R  F+    EDNLRMGNGYRVEG      GGGG           W  V+N F 
Sbjct: 1   MALNFSHRPIFSAGLSEDNLRMGNGYRVEGISETGGGGGGSGSSGDGFGNGWHNVDNCFD 60

Query: 52  --ASDRCNRGPNVGASAAQDSVSKDILDILPSDPFGMDISTTFTGMDIGTTFTAITGWLE 109
              SDRC+RG  V + A QDSVSKDILD+LPSDPFGMDISTTFT         AITGWLE
Sbjct: 61  YGGSDRCDRGGGV-SGATQDSVSKDILDLLPSDPFGMDISTTFT---------AITGWLE 110

Query: 110 DLEFDYGGYQ-RDQLRPTEHSYQLFAELNFFWNNAMRFHGFP-GGNTGVEERN------- 160
           DL+FDYGGY   D++  +  +Y LFA LNF WNNA+RFH FP GGN  +EE++       
Sbjct: 111 DLDFDYGGYHVNDEIGTSGENYPLFAGLNFIWNNAVRFHTFPQGGNVCIEEKDFRGVSGF 170

Query: 161 ----------------VLHGQSGPGESS-----------------------SSRGDGAVS 181
                           + HG  G GE S                       S R  G  S
Sbjct: 171 SEFSRREAGEVSCSEKIFHGVRGFGEFSRREVGEASCIKKNFQGMSGFGEFSRREVGEAS 230

Query: 182 CNFDFGYACDDMHDMLGLGREFKDVAIASVSGDTSCMDDVSCLGGDDLAPHPALSFCLSY 241
           C+F  G +CD M  +L    ++KDVAIA+VSGDT  MDDV+ L GD+   H  ++  L Y
Sbjct: 231 CSFGAGSSCD-MDAVLDFRCDYKDVAIANVSGDTD-MDDVNFLEGDERILHSVINSSLRY 288

Query: 242 LGLPDLLVVEGVCKYLQSTVRGDPLLWRSIHIDQPLNERITDDVLLELTSRAQGNLQCLS 301
           LGL DLLV+E VCK L STVR DP +W SIHIDQPLNERITDD+LLELT+RAQG LQCLS
Sbjct: 289 LGLSDLLVLERVCKSLHSTVR-DPQMWTSIHIDQPLNERITDDILLELTNRAQGLLQCLS 347

Query: 302 LVECTRITDEGLKRVLLANPKLIKLSVPGCTRLSIEGIVGILRVHNSRGTQRVKHLHIGG 361
           LVECTRITD+GL+RVL  NPKL KLSVPGCTRLSIEGIVG+L+ +NS GTQ+VKHLHIGG
Sbjct: 348 LVECTRITDDGLRRVLEVNPKLSKLSVPGCTRLSIEGIVGMLKAYNSMGTQKVKHLHIGG 407

Query: 362 LYGITQKHFEELQLLLGT---------------------------DSQLQQHSHKPHYYS 394
           LYG+TQKHFE+++LLLGT                           DSQL +HSHKPH+Y 
Sbjct: 408 LYGVTQKHFEQIKLLLGTDKKRLENALDSQPHENARDSQPQENAPDSQLLEHSHKPHFYC 467

Query: 395 RANLYMSCDDDQAIDIEVCPRCQNLRLVYDCPAEGCQG-DGHPTQMCRACTLCIPRCSQC 453
           R NLY+ CDDD+ +DIEVCPRCQNLRLVYDCPAEGCQG  GH TQ+CRACTLCIPRCSQC
Sbjct: 468 RWNLYLPCDDDRDLDIEVCPRCQNLRLVYDCPAEGCQGVGGHATQLCRACTLCIPRCSQC 527

Query: 454 GRCINDSEYEETFCLELLCSSCSKQLVK 481
           GRCINDSEYEETFCLELLCS CS+ LVK
Sbjct: 528 GRCINDSEYEETFCLELLCSHCSQHLVK 555


>Medtr8g104920.1 | F-box SKIP28-like protein | HC |
           chr8:44233342-44235029 | 20130731
          Length = 320

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 143/257 (55%), Gaps = 5/257 (1%)

Query: 231 PHPALSFCLSYLGLPDLLVVEGVCKYLQSTVRGDPLLWRSIHIDQPLNERITDDVLLELT 290
           PH A+   ++YL + ++L +  VC  L+  V  D LLW  I ++ PLN R++DD LL++T
Sbjct: 25  PHEAMFLVIAYLRVYEVLTMSRVCTSLRYAVNNDVLLWLKIIVETPLNSRLSDDTLLKIT 84

Query: 291 SRAQGNLQCLSLVECTRITDEGLKRVLLANPKLIKLSVPGCTRLSIEGIVGILRVHNSRG 350
           S+A G LQ L+L+ C  + D GL+RV+  NP + +L +P CT ++ EG++  ++    R 
Sbjct: 85  SKANGRLQTLALMNCIHVADHGLQRVVEQNPFIEELHIPACTGITPEGVLTAVKTLCQRA 144

Query: 351 TQRVKHLHIGGLYGITQKHFEELQLLLGTDSQLQ-QHSHKPHYYSR---ANLYMSCDDDQ 406
              +  L + G+Y +   H + L   L  +  L+ + + +P YY +    + +   ++ +
Sbjct: 145 NC-LTTLSLNGIYNLQNDHLDVLTSNLRKNLPLEDELTQQPIYYHKRGSVSAFKHNENQR 203

Query: 407 AIDIEVCPRCQNLRLVYDCPAEGCQGDGHPTQMCRACTLCIPRCSQCGRCINDSEYEETF 466
            ID+E CP+C  +R+VYDCP   C         CR C  CIPRC  CG C+   E E+  
Sbjct: 204 IIDLEKCPKCFEVRMVYDCPKVDCNRKELCQAQCRGCIFCIPRCENCGGCVGSEELEDVA 263

Query: 467 CLELLCSSCSKQLVKCS 483
           C + LC  C  QL KC+
Sbjct: 264 CGDFLCLECWLQLPKCN 280