Miyakogusa Predicted Gene

Lj4g3v2513900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2513900.1 Non Characterized Hit- tr|I1K3J0|I1K3J0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20253 PE,84.77,0,SIGNAL
RECOGNITION PARTICLE 72,NULL; SIGNAL RECOGNITION PARTICLE 72,Signal
recognition particle, SRP,CUFF.51088.1
         (662 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g079990.1 | signal recognition particle 72 kDa protein | H...   971   0.0  

>Medtr8g079990.1 | signal recognition particle 72 kDa protein | HC |
           chr8:34337609-34341941 | 20130731
          Length = 668

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/634 (75%), Positives = 536/634 (84%), Gaps = 2/634 (0%)

Query: 18  LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVEDALSAIHS 77
           LEDLFTTL++HIQ+SAF +A K+ DQILA+AP DEDA+RCK+VALIK DR +DA+SAI S
Sbjct: 18  LEDLFTTLNKHIQASAFTNAVKLTDQILAIAPADEDALRCKIVALIKDDRFDDAVSAIQS 77

Query: 78  SKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLGKMDACLDIYQ 137
           S+T P+DFH+ KAYCLY+QNKLDEALESL+K ER+DETMLLESQILYRLGKMDACLDIYQ
Sbjct: 78  SRTPPEDFHFFKAYCLYKQNKLDEALESLQKHERNDETMLLESQILYRLGKMDACLDIYQ 137

Query: 138 KLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTACSLIERKKYTD 197
           KLQKSKID LEINSVAA VMAGRSS+VQG LDS R+KATSSFELAYNTACSLI+R KYT+
Sbjct: 138 KLQKSKIDMLEINSVAALVMAGRSSEVQGWLDSFRVKATSSFELAYNTACSLIQRNKYTE 197

Query: 198 AEQLLLSGRRIGQEVLMEDNLPDDEIEIELSPLAVQLAYVRQLLGNKQDAIEAYTDVIKR 257
           AEQLLLS RRIGQE LMEDN PD++IE ELSP+AVQL YV+QLLG KQDAIEAY D+IKR
Sbjct: 198 AEQLLLSARRIGQESLMEDNWPDEDIENELSPIAVQLGYVQQLLGRKQDAIEAYVDMIKR 257

Query: 258 DMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGLDLKLSSKERETI 317
           DMADESSIAVA+NNLVSL+G KDVSDSL+KLDRLKEK+ Q+FRLAHGLDLKLS+KERE I
Sbjct: 258 DMADESSIAVAVNNLVSLKGPKDVSDSLKKLDRLKEKEMQSFRLAHGLDLKLSAKEREAI 317

Query: 318 YANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKAGRAEEILAQFAG 377
           YANR+LLLLHAN++DQARELVSALP MFP+S +PVLLQAALLVRENKAGRAEEILAQFAG
Sbjct: 318 YANRVLLLLHANRIDQARELVSALPVMFPESAVPVLLQAALLVRENKAGRAEEILAQFAG 377

Query: 378 KFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVSLKERAGDIEGAA 437
           KFPEKS+                    DSL K+ DIQHMPATVAT+VSLKERA D+EGAA
Sbjct: 378 KFPEKSQVLYLARAQVAAAAGHPHIAADSLTKLPDIQHMPATVATLVSLKERANDVEGAA 437

Query: 438 SVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLVKSQGSIEALVGL 497
            VLD+AT+WWSNAMTEDNKLN+IMQEAASFKLRHG+EE AAKLYE LVKSQGSIEALVGL
Sbjct: 438 VVLDSATKWWSNAMTEDNKLNIIMQEAASFKLRHGREEDAAKLYEELVKSQGSIEALVGL 497

Query: 498 ITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVD--VTETYEEGXXX 555
           ITTVAR DV+KAELYEK+LKTL G KGIDVD LERTSGVKQV GP+   V ET +EG   
Sbjct: 498 ITTVARLDVIKAELYEKKLKTLPGLKGIDVDGLERTSGVKQVEGPLHAGVAETNDEGKNK 557

Query: 556 XXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAAQVRGSQGAVA 615
                                       ERWLPKRERSTFRPKRKDKRAAQVRGSQGAV 
Sbjct: 558 TKTKRKRKRKPRYPKGFNPANPGPPPDPERWLPKRERSTFRPKRKDKRAAQVRGSQGAVV 617

Query: 616 KEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQ 649
           ++K +AG+SS+HSNPKSNQ+TSSKG  Q+AVSEQ
Sbjct: 618 RDKQEAGASSSHSNPKSNQATSSKGATQSAVSEQ 651