Miyakogusa Predicted Gene
- Lj4g3v2513900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2513900.1 Non Characterized Hit- tr|I1K3J0|I1K3J0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20253 PE,84.77,0,SIGNAL
RECOGNITION PARTICLE 72,NULL; SIGNAL RECOGNITION PARTICLE 72,Signal
recognition particle, SRP,CUFF.51088.1
(662 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g079990.1 | signal recognition particle 72 kDa protein | H... 971 0.0
>Medtr8g079990.1 | signal recognition particle 72 kDa protein | HC |
chr8:34337609-34341941 | 20130731
Length = 668
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/634 (75%), Positives = 536/634 (84%), Gaps = 2/634 (0%)
Query: 18 LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVEDALSAIHS 77
LEDLFTTL++HIQ+SAF +A K+ DQILA+AP DEDA+RCK+VALIK DR +DA+SAI S
Sbjct: 18 LEDLFTTLNKHIQASAFTNAVKLTDQILAIAPADEDALRCKIVALIKDDRFDDAVSAIQS 77
Query: 78 SKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLGKMDACLDIYQ 137
S+T P+DFH+ KAYCLY+QNKLDEALESL+K ER+DETMLLESQILYRLGKMDACLDIYQ
Sbjct: 78 SRTPPEDFHFFKAYCLYKQNKLDEALESLQKHERNDETMLLESQILYRLGKMDACLDIYQ 137
Query: 138 KLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTACSLIERKKYTD 197
KLQKSKID LEINSVAA VMAGRSS+VQG LDS R+KATSSFELAYNTACSLI+R KYT+
Sbjct: 138 KLQKSKIDMLEINSVAALVMAGRSSEVQGWLDSFRVKATSSFELAYNTACSLIQRNKYTE 197
Query: 198 AEQLLLSGRRIGQEVLMEDNLPDDEIEIELSPLAVQLAYVRQLLGNKQDAIEAYTDVIKR 257
AEQLLLS RRIGQE LMEDN PD++IE ELSP+AVQL YV+QLLG KQDAIEAY D+IKR
Sbjct: 198 AEQLLLSARRIGQESLMEDNWPDEDIENELSPIAVQLGYVQQLLGRKQDAIEAYVDMIKR 257
Query: 258 DMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGLDLKLSSKERETI 317
DMADESSIAVA+NNLVSL+G KDVSDSL+KLDRLKEK+ Q+FRLAHGLDLKLS+KERE I
Sbjct: 258 DMADESSIAVAVNNLVSLKGPKDVSDSLKKLDRLKEKEMQSFRLAHGLDLKLSAKEREAI 317
Query: 318 YANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKAGRAEEILAQFAG 377
YANR+LLLLHAN++DQARELVSALP MFP+S +PVLLQAALLVRENKAGRAEEILAQFAG
Sbjct: 318 YANRVLLLLHANRIDQARELVSALPVMFPESAVPVLLQAALLVRENKAGRAEEILAQFAG 377
Query: 378 KFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVSLKERAGDIEGAA 437
KFPEKS+ DSL K+ DIQHMPATVAT+VSLKERA D+EGAA
Sbjct: 378 KFPEKSQVLYLARAQVAAAAGHPHIAADSLTKLPDIQHMPATVATLVSLKERANDVEGAA 437
Query: 438 SVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLVKSQGSIEALVGL 497
VLD+AT+WWSNAMTEDNKLN+IMQEAASFKLRHG+EE AAKLYE LVKSQGSIEALVGL
Sbjct: 438 VVLDSATKWWSNAMTEDNKLNIIMQEAASFKLRHGREEDAAKLYEELVKSQGSIEALVGL 497
Query: 498 ITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVD--VTETYEEGXXX 555
ITTVAR DV+KAELYEK+LKTL G KGIDVD LERTSGVKQV GP+ V ET +EG
Sbjct: 498 ITTVARLDVIKAELYEKKLKTLPGLKGIDVDGLERTSGVKQVEGPLHAGVAETNDEGKNK 557
Query: 556 XXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAAQVRGSQGAVA 615
ERWLPKRERSTFRPKRKDKRAAQVRGSQGAV
Sbjct: 558 TKTKRKRKRKPRYPKGFNPANPGPPPDPERWLPKRERSTFRPKRKDKRAAQVRGSQGAVV 617
Query: 616 KEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQ 649
++K +AG+SS+HSNPKSNQ+TSSKG Q+AVSEQ
Sbjct: 618 RDKQEAGASSSHSNPKSNQATSSKGATQSAVSEQ 651