Miyakogusa Predicted Gene

Lj4g3v2500600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2500600.1 tr|A9REY4|A9REY4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65234
,30.3,2e-18,Remorin_C,Remorin, C-terminal; coiled-coil,NULL; seg,NULL;
FAMILY NOT NAMED,NULL,CUFF.51064.1
         (538 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g079482.1 | carboxy-terminal region remorin | HC | chr8:34...   706   0.0  
Medtr8g079482.2 | carboxy-terminal region remorin | HC | chr8:34...   615   e-176
Medtr8g080180.2 | carboxy-terminal region remorin | HC | chr8:34...    98   3e-20
Medtr8g080180.1 | carboxy-terminal region remorin | HC | chr8:34...    98   3e-20
Medtr8g023130.1 | carboxy-terminal region remorin | HC | chr8:82...    71   3e-12
Medtr1g019280.1 | carboxy-terminal region remorin | HC | chr1:57...    56   7e-08
Medtr1g019280.2 | carboxy-terminal region remorin | HC | chr1:57...    56   8e-08

>Medtr8g079482.1 | carboxy-terminal region remorin | HC |
           chr8:34063857-34067628 | 20130731
          Length = 528

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/541 (66%), Positives = 401/541 (74%), Gaps = 16/541 (2%)

Query: 1   MEYERIQKVQAGIISPSKLRMKLLGPRKKDGXXXXXXXXXXXXIEDAEFVXXXXXXXXXX 60
           MEYERI+K Q GIISPSKLRMKLLGPRKKDG            IED EFV          
Sbjct: 1   MEYERIEKPQTGIISPSKLRMKLLGPRKKDGSNSNSSRTSPSRIEDPEFVNSLLSSNDYN 60

Query: 61  XXXEVTSPSLEVLSLKPSSDAVLNQRQSDHTSHEPKETMPRENGDTVRVKTQHFHKLDTG 120
              EVTSPSLE LS KPS DAVL+ R         KE MP ENGDT  VK QHFHK+DTG
Sbjct: 61  LDYEVTSPSLEALSSKPSRDAVLDLRL--------KEAMPGENGDTGHVKMQHFHKVDTG 112

Query: 121 SSSAIHPMRTTEDENLDYDSNASSSSFEFDKGERPVSNPATRSRLRPIPSKWNDAEKWIM 180
           SSS IHP+RTTEDENLDYDS ASSSSFEFDKGERPVSN  +RS LRPIPSKWNDAEKWIM
Sbjct: 113 SSSTIHPVRTTEDENLDYDSQASSSSFEFDKGERPVSNHVSRSLLRPIPSKWNDAEKWIM 172

Query: 181 NRQNTQASYSKKNINVHGLANRLQASMVRVAPESGNYDHKLPATKVTETKRVDFCQPASH 240
           NRQ+ Q   ++KN ++   A RL  SM RV PES N+DHKLP +KVTETKRVD+CQP SH
Sbjct: 173 NRQHIQ---TRKN-SIQSQAIRLPTSMARVIPESSNFDHKLPTSKVTETKRVDYCQPTSH 228

Query: 241 A--GFEKFSFVPSDAHSVSGQAHGRIPVAESFPQSKDLKEVNDLGLSCSSSTENETGIPG 298
           +   FEKFSFVPSDAHSVSGQAHG++ V ESFPQS+DL EVN+   SC++S +++T  PG
Sbjct: 229 SHMAFEKFSFVPSDAHSVSGQAHGKLSVVESFPQSRDLMEVNEADSSCTTSIDDQTAFPG 288

Query: 299 IRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXXXXXXXXXXXGAPAPTPLGNTSD 358
           IRSVAMRDMGTEMTP+PSQEPSQT TPVGSA                GAPAPTPLG T+D
Sbjct: 289 IRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPTSSMPSTPRRGAPAPTPLGYTTD 348

Query: 359 EDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMNIAAWASKDDQENKKPSAAETNA 418
           ED QF    S K LSEEEMK+KTRREIAALG++LGKMNIAAWASKDD+E+KK +  + + 
Sbjct: 349 EDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMNIAAWASKDDEESKK-AGRDADT 407

Query: 419 REQERIEIEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKVEQMR 478
           +EQERIE EKRAALWEEAEKS+HTAR KREEI+IQAWESQ+KAKLEAEMRRTEAKVEQMR
Sbjct: 408 QEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKVEQMR 467

Query: 479 AQTHAKMVKKIAMXXXXXXXXXXXXXXXXXXXXXXXXXQAEYIRQTGKLPSYTHI-CCGW 537
           AQTHAKMVKKIAM                         QAEYIRQTGK+P   +I CCGW
Sbjct: 468 AQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIRQTGKMPYSNYIMCCGW 527

Query: 538 L 538
           L
Sbjct: 528 L 528


>Medtr8g079482.2 | carboxy-terminal region remorin | HC |
           chr8:34063857-34067628 | 20130731
          Length = 438

 Score =  615 bits (1586), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 308/443 (69%), Positives = 345/443 (77%), Gaps = 8/443 (1%)

Query: 99  MPRENGDTVRVKTQHFHKLDTGSSSAIHPMRTTEDENLDYDSNASSSSFEFDKGERPVSN 158
           MP ENGDT  VK QHFHK+DTGSSS IHP+RTTEDENLDYDS ASSSSFEFDKGERPVSN
Sbjct: 1   MPGENGDTGHVKMQHFHKVDTGSSSTIHPVRTTEDENLDYDSQASSSSFEFDKGERPVSN 60

Query: 159 PATRSRLRPIPSKWNDAEKWIMNRQNTQASYSKKNINVHGLANRLQASMVRVAPESGNYD 218
             +RS LRPIPSKWNDAEKWIMNRQ+ Q   ++KN ++   A RL  SM RV PES N+D
Sbjct: 61  HVSRSLLRPIPSKWNDAEKWIMNRQHIQ---TRKN-SIQSQAIRLPTSMARVIPESSNFD 116

Query: 219 HKLPATKVTETKRVDFCQPASHA--GFEKFSFVPSDAHSVSGQAHGRIPVAESFPQSKDL 276
           HKLP +KVTETKRVD+CQP SH+   FEKFSFVPSDAHSVSGQAHG++ V ESFPQS+DL
Sbjct: 117 HKLPTSKVTETKRVDYCQPTSHSHMAFEKFSFVPSDAHSVSGQAHGKLSVVESFPQSRDL 176

Query: 277 KEVNDLGLSCSSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXX 336
            EVN+   SC++S +++T  PGIRSVAMRDMGTEMTP+PSQEPSQT TPVGSA       
Sbjct: 177 MEVNEADSSCTTSIDDQTAFPGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPT 236

Query: 337 XXXXXXXXXGAPAPTPLGNTSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMN 396
                    GAPAPTPLG T+DED QF    S K LSEEEMK+KTRREIAALG++LGKMN
Sbjct: 237 SSMPSTPRRGAPAPTPLGYTTDEDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMN 296

Query: 397 IAAWASKDDQENKKPSAAETNAREQERIEIEKRAALWEEAEKSRHTARFKREEIKIQAWE 456
           IAAWASKDD+E+KK +  + + +EQERIE EKRAALWEEAEKS+HTAR KREEI+IQAWE
Sbjct: 297 IAAWASKDDEESKK-AGRDADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWE 355

Query: 457 SQEKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXXXXXXXXX 516
           SQ+KAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAM                         
Sbjct: 356 SQQKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAA 415

Query: 517 QAEYIRQTGKLPSYTHI-CCGWL 538
           QAEYIRQTGK+P   +I CCGWL
Sbjct: 416 QAEYIRQTGKMPYSNYIMCCGWL 438


>Medtr8g080180.2 | carboxy-terminal region remorin | HC |
           chr8:34442403-34445750 | 20130731
          Length = 361

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 152/380 (40%), Gaps = 78/380 (20%)

Query: 156 VSNPATRSRLRPIPSKWNDAEKWIMNRQNTQASYSKKNINVHGLANRLQASMVRVAPESG 215
           VSN    +  +P PSKW+DA+KW++                 GL+   +    +  P + 
Sbjct: 41  VSNHHRINMGKPTPSKWDDAQKWLV-----------------GLSKGGEKGQSKSKPRNS 83

Query: 216 NYDHK---LPATKVTETKRVDFCQPASHAGFEKFSFVPSDAHSVSGQAHGRIPVAESFPQ 272
           N D      P  +  E    D C            F+ + +     +   ++        
Sbjct: 84  NADDLRLIAPVPQKEEEHDDDGCH----------DFMTTTSSEYEAEDSKKVEC------ 127

Query: 273 SKDLKEVNDLGLSCSSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXX 332
             D + +  +  +     EN+  I  ++S+  RDMGTEMTP+ SQEPS+TA         
Sbjct: 128 --DDESIWRMNNNSKVLAENKNTI-HVQSICFRDMGTEMTPIASQEPSRTA--------- 175

Query: 333 XXXXXXXXXXXXXGAPAPTPLGNTSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRL 392
                             TP+  T+      P  +S  H          R +   L +  
Sbjct: 176 ------------------TPIRATT------PTTRSPIHSG---TSTPMRNQNGLLQMEA 208

Query: 393 GKMNIAAWASKDDQENKKPSAAETNAREQERIEI---EKRAALWEEAEKSRHTARFKREE 449
              N  +   +  +E+      E N  E +  ++   E RA  W+EAE++++ ARFKREE
Sbjct: 209 ASGNNGSTTRQCGEESSPCKMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREE 268

Query: 450 IKIQAWESQEKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXX 509
           +KIQAWE+ +  K E EM++ E K E+M+A    K+  K+A                   
Sbjct: 269 MKIQAWENHQIRKAEMEMKKMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLND 328

Query: 510 XXXXXXXQAEYIRQTGKLPS 529
                  + +YIR+TG +PS
Sbjct: 329 NALRTTERVDYIRRTGHVPS 348


>Medtr8g080180.1 | carboxy-terminal region remorin | HC |
           chr8:34442437-34445750 | 20130731
          Length = 361

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 152/380 (40%), Gaps = 78/380 (20%)

Query: 156 VSNPATRSRLRPIPSKWNDAEKWIMNRQNTQASYSKKNINVHGLANRLQASMVRVAPESG 215
           VSN    +  +P PSKW+DA+KW++                 GL+   +    +  P + 
Sbjct: 41  VSNHHRINMGKPTPSKWDDAQKWLV-----------------GLSKGGEKGQSKSKPRNS 83

Query: 216 NYDHK---LPATKVTETKRVDFCQPASHAGFEKFSFVPSDAHSVSGQAHGRIPVAESFPQ 272
           N D      P  +  E    D C            F+ + +     +   ++        
Sbjct: 84  NADDLRLIAPVPQKEEEHDDDGCH----------DFMTTTSSEYEAEDSKKVEC------ 127

Query: 273 SKDLKEVNDLGLSCSSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXX 332
             D + +  +  +     EN+  I  ++S+  RDMGTEMTP+ SQEPS+TA         
Sbjct: 128 --DDESIWRMNNNSKVLAENKNTI-HVQSICFRDMGTEMTPIASQEPSRTA--------- 175

Query: 333 XXXXXXXXXXXXXGAPAPTPLGNTSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRL 392
                             TP+  T+      P  +S  H          R +   L +  
Sbjct: 176 ------------------TPIRATT------PTTRSPIHSG---TSTPMRNQNGLLQMEA 208

Query: 393 GKMNIAAWASKDDQENKKPSAAETNAREQERIEI---EKRAALWEEAEKSRHTARFKREE 449
              N  +   +  +E+      E N  E +  ++   E RA  W+EAE++++ ARFKREE
Sbjct: 209 ASGNNGSTTRQCGEESSPCKMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREE 268

Query: 450 IKIQAWESQEKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXX 509
           +KIQAWE+ +  K E EM++ E K E+M+A    K+  K+A                   
Sbjct: 269 MKIQAWENHQIRKAEMEMKKMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLND 328

Query: 510 XXXXXXXQAEYIRQTGKLPS 529
                  + +YIR+TG +PS
Sbjct: 329 NALRTTERVDYIRRTGHVPS 348


>Medtr8g023130.1 | carboxy-terminal region remorin | HC |
           chr8:8275146-8279407 | 20130731
          Length = 463

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 144/340 (42%), Gaps = 36/340 (10%)

Query: 166 RPIPSKWNDAEKWIM---------NRQNTQASYSKKNINVHGLANRLQASMVR-VAPESG 215
           +  PSKW+DAEKW++         +  NT    S          N  +  M    + +S 
Sbjct: 93  KSFPSKWDDAEKWLISTSCHDSPAHNNNTLKGVSSLESGTRHCDNGFKQKMEEGFSEKSR 152

Query: 216 NYDHKLPATKVT--ETKRVDFCQPASHAGFEKFSFVPSDAHSVSGQAHGRIPVAESFPQS 273
             + K+ +  VT  ++         S   F   S  P+D            P+   F  S
Sbjct: 153 VIEEKVLSKSVTNFQSSSSSLDHNNSVGAFNGISCPPTDIVLKDKYTDSIEPILPKFRYS 212

Query: 274 KDLKEVNDL-GLSCSSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXX 332
           +  KE       +C +  E+ T +  I  V  +D+GTEMTP+ S   S+  TP  S+   
Sbjct: 213 EPTKEGFLFRNQACEAMHESYTEV--IHEVKHKDVGTEMTPLGSSTTSRCHTPFKSSSPA 270

Query: 333 XXXXXXXXXXXXXGAPAPTPLGNTSDEDSQFPAVKSNK-HLSEEEMKLKTRREIAALGVR 391
                            P  L N         A++  + H S+ +    T+ ++ A    
Sbjct: 271 RHNTPASRS-------GPLALSNIDSNGCSVDAIQLEECHFSKLQFG-TTKYDLVA---- 318

Query: 392 LGKMNIAAWASKDDQENKKPSAAETNAREQERIEIEKRAALWEEAEKSRHTARFKREEIK 451
                   W+S +++E +   +   NA    + + +  AA WEE EK++   R++REE K
Sbjct: 319 ------PNWSSSEEEEKEISKSLRHNA--SLKADSDCIAASWEEDEKNKCCLRYQREEAK 370

Query: 452 IQAWESQEKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAM 491
           IQAW + + AK EA  ++ E K+++MR+    K++K++++
Sbjct: 371 IQAWINLQNAKAEARSKKLEVKIQKMRSNLEEKLMKRMSV 410


>Medtr1g019280.1 | carboxy-terminal region remorin | HC |
           chr1:5782200-5777571 | 20130731
          Length = 620

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 417 NAREQERIEIEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKVEQ 476
           N    ++ E   R++ WE +E+S+  ++ KREE KI AWE+ +KAK EA +++ E K+E+
Sbjct: 498 NVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAIQKLEMKLEK 557

Query: 477 MRAQTHAKMVKKI 489
            RA +  K++ K+
Sbjct: 558 KRASSMDKIMNKL 570


>Medtr1g019280.2 | carboxy-terminal region remorin | HC |
           chr1:5781751-5777571 | 20130731
          Length = 558

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 417 NAREQERIEIEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKVEQ 476
           N    ++ E   R++ WE +E+S+  ++ KREE KI AWE+ +KAK EA +++ E K+E+
Sbjct: 436 NVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAIQKLEMKLEK 495

Query: 477 MRAQTHAKMVKKI 489
            RA +  K++ K+
Sbjct: 496 KRASSMDKIMNKL 508