Miyakogusa Predicted Gene
- Lj4g3v2401010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2401010.1 Non Characterized Hit- tr|C5YM72|C5YM72_SORBI
Putative uncharacterized protein Sb07g022700
OS=Sorghu,48.67,0.000000000000004,seg,NULL; ZINC_FINGER_C2H2_2,Zinc
finger, C2H2; zf-C2H2,Zinc finger, C2H2; ZINC_FINGER_C2H2_1,Zinc
f,CUFF.50958.1
(421 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |... 231 9e-61
Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC | chr1... 231 1e-60
Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC | chr1... 227 1e-59
Medtr2g099990.1 | C2H2-type zinc finger protein | HC | chr2:4289... 227 2e-59
Medtr2g093960.1 | C2H2-type zinc finger protein | LC | chr2:4003... 226 4e-59
Medtr1g016010.1 | C2H2-type zinc finger protein | HC | chr1:4158... 225 5e-59
Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | ... 223 3e-58
Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC | chr1... 223 3e-58
Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |... 206 2e-53
Medtr2g099990.2 | C2H2-type zinc finger protein | HC | chr2:4289... 193 2e-49
Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC | chr1... 188 1e-47
Medtr2g017720.1 | F-box associated protein | LC | chr2:5437660-5... 144 2e-34
Medtr3g102000.1 | hypothetical protein | LC | chr3:46988766-4698... 103 3e-22
Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |... 74 3e-13
Medtr1g093095.1 | C2H2-type zinc finger protein | HC | chr1:4193... 65 2e-10
>Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |
chr8:5790010-5786899 | 20130731
Length = 517
Score = 231 bits (589), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 128/157 (81%), Gaps = 2/157 (1%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
K+KR G PDPDAEV+++SPK+LL +R++CEICN+GFQRDQNLQ+HRR H +PWK LK
Sbjct: 62 KKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWK-LK 120
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
+ T++ +K+V+VCPEP+C+HHDP ALGDL GIKKHF RKH K+W C+KC+K YAVQ
Sbjct: 121 QRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG-EKKWKCEKCSKKYAVQ 179
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
SD+KAH KTCGTR + CDCG +FSR +SFI H+ C+
Sbjct: 180 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCD 216
>Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC |
chr1:50790900-50782752 | 20130731
Length = 571
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 131/163 (80%), Gaps = 5/163 (3%)
Query: 34 RRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRET 93
R GTP+PDAEV++LSPKTL+ ++R++CE+CN+GFQR+QNLQ+HRR H +PWK LK++T
Sbjct: 47 RNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWK-LKQKT 105
Query: 94 TQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDY 153
T+ K++V++CPEP+C+HHDP ALGDL GIKKH+ RKH K+W CDKC+K YAVQSD+
Sbjct: 106 TKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG-EKKWKCDKCSKKYAVQSDW 164
Query: 154 KAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCNMRL---PRQ 193
KAH KTCGTR + CDCG +FSR +SFI H+ C+ PRQ
Sbjct: 165 KAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQ 207
>Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC |
chr1:42286106-42289867 | 20130731
Length = 539
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 130/157 (82%), Gaps = 2/157 (1%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
K++R GTP+PDAEV++LSPKTL+ ++R++CE+CN+GFQR+QNLQ+HRR H +PWK LK
Sbjct: 47 KKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWK-LK 105
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
+++ + +++V++CPEP+C+HHDP ALGDL GIKKHF RKH K+W C+KC+K YAVQ
Sbjct: 106 QKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE-KKWKCEKCSKKYAVQ 164
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
SD+KAH KTCGTR + CDCG +FSR +SFI H+ C+
Sbjct: 165 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCD 201
>Medtr2g099990.1 | C2H2-type zinc finger protein | HC |
chr2:42897047-42899888 | 20130731
Length = 468
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 127/157 (80%), Gaps = 2/157 (1%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
K++R G PDP AEV++LSPKTL+ ++R++CEICN+GFQRDQNLQ+H+R H +PWK LK
Sbjct: 46 KKRRNLPGNPDPQAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWK-LK 104
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
+ T+ +K+V+VCPEP+C+HHDP ALGDL GIKKHF RKH K+W CDKC+K YAVQ
Sbjct: 105 QRTSNEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHG-EKKWKCDKCSKKYAVQ 163
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
SD+KAH KTCGTR + CDCG +FSR +SFI H+ C+
Sbjct: 164 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCD 200
>Medtr2g093960.1 | C2H2-type zinc finger protein | LC |
chr2:40039886-40042385 | 20130731
Length = 414
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 1/156 (0%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
KRKR GTPDPD+EV++LSPK+L+ S+R++CE+CN+GF+RDQNLQ+HRR H +PWKL +
Sbjct: 32 KRKRSLPGTPDPDSEVIALSPKSLMTSNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQ 91
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
R + +K+V+VCPE SC+HHDP ALGDL GIKKHF RKH K+W CDKC+K YAVQ
Sbjct: 92 RNKLEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHG-EKKWKCDKCSKKYAVQ 150
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTC 186
SD+KAH K CGT+ + CDCG +FSR +SF+ H+ C
Sbjct: 151 SDWKAHSKICGTKEYRCDCGTLFSRKDSFLTHRAFC 186
>Medtr1g016010.1 | C2H2-type zinc finger protein | HC |
chr1:4158857-4161721 | 20130731
Length = 452
Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
KRKR G PDP+A+V++LSP+TLL ++R++CEICN+GFQRDQNLQ+H+R H +PWKL K
Sbjct: 41 KRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKK 100
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
R + +K+V+VCPEP+C+HHDP ALGDL GIKKHF RKH K+W C+KC+K YAVQ
Sbjct: 101 RNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGE-KKWKCEKCSKRYAVQ 159
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCNM 188
SD+KAH K CGT+ + CDCG +FSR +SFI H+ C++
Sbjct: 160 SDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDV 197
>Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | HC
| chr4:22086566-22083892 | 20130731
Length = 495
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
K+KR GTPDP++EVV++SPK+L+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKL +
Sbjct: 38 KKKRNLPGTPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 97
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
R +K+V+VCPE +C+HH+P ALGDL GIKKH+ RKH K+W C+KC+K YAVQ
Sbjct: 98 RANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHG-EKKWKCEKCSKKYAVQ 156
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
SD+KAH K CGTR + CDCG +FSR +SFI H+ C+
Sbjct: 157 SDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCD 193
>Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC |
chr1:50789869-50782797 | 20130731
Length = 582
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 126/155 (81%), Gaps = 5/155 (3%)
Query: 42 PDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQKKRV 101
PDAEV++LSPKTL+ ++R++CE+CN+GFQR+QNLQ+HRR H +PWK LK++TT+ K++V
Sbjct: 66 PDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWK-LKQKTTKEPKRKV 124
Query: 102 FVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVKTCG 161
++CPEP+C+HHDP ALGDL GIKKH+ RKH K+W CDKC+K YAVQSD+KAH KTCG
Sbjct: 125 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG-EKKWKCDKCSKKYAVQSDWKAHSKTCG 183
Query: 162 TRGHSCDCGRVFSRVESFIEHQDTCNMRL---PRQ 193
TR + CDCG +FSR +SFI H+ C+ PRQ
Sbjct: 184 TREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQ 218
>Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |
chr2:38896799-38894235 | 20130731
Length = 429
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 39 TPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQK 98
T +P+AEV+SLSPKTL+ ++R+VCEIC + FQRDQNLQ+HRR H +PWK LK+ T++ +
Sbjct: 15 TTNPEAEVISLSPKTLMATNRFVCEICLKDFQRDQNLQLHRRGHNLPWK-LKQRTSKEIR 73
Query: 99 KRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVK 158
KRV+VCPE +C+H+ P ALGDL GIKKHF RKH K+W C+KC+K YAVQSD+KAH K
Sbjct: 74 KRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHG-EKKWKCEKCSKFYAVQSDWKAHSK 132
Query: 159 TCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
TCGTR + CDCG +FSR +SF+ H+ C+
Sbjct: 133 TCGTREYKCDCGTIFSRRDSFVTHRAFCD 161
>Medtr2g099990.2 | C2H2-type zinc finger protein | HC |
chr2:42897047-42899888 | 20130731
Length = 399
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 108/133 (81%), Gaps = 2/133 (1%)
Query: 55 LESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQKKRVFVCPEPSCLHHDP 114
+ ++R++CEICN+GFQRDQNLQ+H+R H +PWKL K+ T+ +K+V+VCPEP+C+HHDP
Sbjct: 1 MATNRFICEICNKGFQRDQNLQLHKRGHNLPWKL-KQRTSNEIRKKVYVCPEPTCVHHDP 59
Query: 115 CHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVKTCGTRGHSCDCGRVFS 174
ALGDL GIKKHF RKH K+W CDKC+K YAVQSD+KAH KTCGTR + CDCG +FS
Sbjct: 60 SRALGDLTGIKKHFCRKHG-EKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFS 118
Query: 175 RVESFIEHQDTCN 187
R +SFI H+ C+
Sbjct: 119 RRDSFITHRAFCD 131
>Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC |
chr1:42286195-42289752 | 20130731
Length = 522
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 113/157 (71%), Gaps = 19/157 (12%)
Query: 31 KRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLK 90
K++R GTP +++CE+CN+GFQR+QNLQ+HRR H +PWKL K
Sbjct: 47 KKRRNQPGTPS-----------------KFICEVCNKGFQREQNLQLHRRGHNLPWKL-K 88
Query: 91 RETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQ 150
+++ + +++V++CPEP+C+HHDP ALGDL GIKKHF RKH K+W C+KC+K YAVQ
Sbjct: 89 QKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE-KKWKCEKCSKKYAVQ 147
Query: 151 SDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCN 187
SD+KAH KTCGTR + CDCG +FSR +SFI H+ C+
Sbjct: 148 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCD 184
>Medtr2g017720.1 | F-box associated protein | LC |
chr2:5437660-5435484 | 20130731
Length = 432
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 7/133 (5%)
Query: 24 ENGVLNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHK 83
E+G + N K DP+AEV+SLSPK L+ ++R+VCEIC + FQRDQNLQ+HRR H
Sbjct: 306 ESGRICNLSKIILYAHADPEAEVISLSPKPLMATNRFVCEICLKDFQRDQNLQLHRRGHN 365
Query: 84 VPWKLLKRETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKC 143
+PWK LK+ T++ +KRV+VCPE +H+ P ALGDL GIKKHF RKH KC
Sbjct: 366 LPWK-LKQRTSKKIRKRVYVCPEKIRVHNHPSRALGDLTGIKKHFCRKHGE------KKC 418
Query: 144 NKGYAVQSDYKAH 156
+K Y VQSD+KAH
Sbjct: 419 SKFYVVQSDWKAH 431
>Medtr3g102000.1 | hypothetical protein | LC |
chr3:46988766-46986877 | 20130731
Length = 226
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 30 NKRKRRPAGTPDPDAEVVSLSPKTLLE---SDRYVCEICNQG----FQRDQNLQMHRRRH 82
+K K +P D + + KT L +RYV ++ FQR+QNLQ+HRR +
Sbjct: 5 SKNKTKPYSQIDKNVMLQLTLHKTWLSFNLYNRYVIKLYAHAHPEDFQRNQNLQLHRRGY 64
Query: 83 KVPWKLLKRETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDK 142
+PWKL K+ T++ +KRV+VCPE + +H+ P ALGDL GIKKHF R HS +K W K
Sbjct: 65 NLPWKL-KQRTSKEIRKRVYVCPEKTRVHNHPSRALGDLTGIKKHFCRNHSENK-W---K 119
Query: 143 CNKGYAVQSDYK 154
C+K YAVQSD+K
Sbjct: 120 CSKFYAVQSDWK 131
>Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |
chr5:12937715-12939520 | 20130731
Length = 81
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 41 DPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVP 85
DP+AEV+SLSPK L+ ++R+VCEIC + FQRDQNLQ+HRR + +P
Sbjct: 16 DPEAEVISLSPKPLMATNRFVCEICLKDFQRDQNLQLHRRGYNLP 60
>Medtr1g093095.1 | C2H2-type zinc finger protein | HC |
chr1:41939075-41940250 | 20130731
Length = 294
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 22 LSENGVLNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRR 81
++ N ++N +P+ TP + + L+ ++ C +CN+ F R N+QMH
Sbjct: 77 VALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWG 136
Query: 82 H-----KVPWKL--LKRETTQGQKKRVFVCPEPSC---LHHDPCHALGDLVGIKKHFRRK 131
H K P L K ++ K C C +++ L D ++ H++RK
Sbjct: 137 HGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRK 196
Query: 132 HSNHKQWVCDKCNKGYAVQSDYKAHVKTCGTRGHSCDCGRVFSRVESFIEH 182
H K + C KC K +AV+ D++ H K CG + C CG F S +H
Sbjct: 197 HGG-KSFECRKCRKTFAVRGDWRTHEKNCG-KLWFCICGSDFKHKRSLKDH 245