Miyakogusa Predicted Gene

Lj4g3v2400890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2400890.1 Non Characterized Hit- tr|I1KNA8|I1KNA8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.17400 PE,90,0.0000009,
,AV780028.path1.1
         (38 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g131750.1 | DEAD-box ATP-dependent RNA helicase | HC | chr...    57   5e-09

>Medtr4g131750.1 | DEAD-box ATP-dependent RNA helicase | HC |
           chr4:54963018-54968467 | 20130731
          Length = 480

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 27/30 (90%)

Query: 6   ICDTKRKLQTLLSLIQSDTPESGIIFVGEQ 35
           +CD KRKLQTLLSLIQSD PESGIIFV EQ
Sbjct: 317 VCDIKRKLQTLLSLIQSDAPESGIIFVSEQ 346