Miyakogusa Predicted Gene

Lj4g3v2400580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2400580.1 tr|B9GWT3|B9GWT3_POPTR Tir-nbs resistance protein
OS=Populus trichocarpa GN=POPTRDRAFT_554389 PE=4
S,27.78,0.029,seg,NULL,CUFF.50918.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g117270.1 | RING zinc finger protein, putative | HC | chr4...   266   7e-72
Medtr2g022190.1 | RING zinc finger protein, putative | HC | chr2...   233   6e-62

>Medtr4g117270.1 | RING zinc finger protein, putative | HC |
           chr4:48594798-48593945 | 20130731
          Length = 164

 Score =  266 bits (680), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 140/167 (83%), Gaps = 6/167 (3%)

Query: 1   MAEKKKQFKSLMGKVQGFSLVPFGGCFDSCRDHTQGSGNGTRIWNLSDRPVELQIRVGSI 60
           M++ KK  KSLMGKVQGFSL   GGCFD CRD  QGSG GTRIWNLSD+PVELQIRVGSI
Sbjct: 1   MSKNKKHMKSLMGKVQGFSLPSLGGCFDGCRDQAQGSGFGTRIWNLSDKPVELQIRVGSI 60

Query: 61  LKKIHTLKPGSSKRVKCKSIYKAYMPVAAXXXXXXXXRSLKNLLYYYDETCHPYIWIHDT 120
           LKKIHTLKPGSSKR+KCK+IYKAYMP            +LKNLLY YDET HPYIWIHDT
Sbjct: 61  LKKIHTLKPGSSKRLKCKNIYKAYMPRNG-----SVGENLKNLLYSYDETSHPYIWIHDT 115

Query: 121 GCH-SLRMVKQQYISLEDLRDSSEIRIFRDHQRGSISVRKRTRPDLC 166
           GCH SL+MVKQQYISLED+RDSSEI+IFRDHQRGSISVRKR RPD C
Sbjct: 116 GCHNSLKMVKQQYISLEDMRDSSEIKIFRDHQRGSISVRKRMRPDFC 162


>Medtr2g022190.1 | RING zinc finger protein, putative | HC |
           chr2:7624515-7625283 | 20130731
          Length = 160

 Score =  233 bits (594), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 126/162 (77%), Gaps = 4/162 (2%)

Query: 5   KKQFKSLMGKVQGFSLVPFGGCFDSCRDHTQGSGNGTRIWNLSDRPVELQIRVGSILKKI 64
           K Q +SLMGK++G SL   GGCFD+C D TQ  G GTRIWNLSDRPVELQIRVGSILKK+
Sbjct: 3   KNQLESLMGKMRGLSLQSLGGCFDTCYDQTQAYGLGTRIWNLSDRPVELQIRVGSILKKV 62

Query: 65  HTLKPGSSKRVKCKSIYKAYMPVAAXXXXXXXXRSLKNLLYYYDETCHPYIWIHDTGCHS 124
           H LKPGSSKRVK K IYK YMP  +          +K+LLYYYDETCHPYIWIHD    S
Sbjct: 63  HILKPGSSKRVKSKRIYKTYMPSRSGSDNV----GMKSLLYYYDETCHPYIWIHDIEGDS 118

Query: 125 LRMVKQQYISLEDLRDSSEIRIFRDHQRGSISVRKRTRPDLC 166
           LRMVKQQYISLEDL+ SSEIRI RDH RG ISV KRTRPDLC
Sbjct: 119 LRMVKQQYISLEDLKMSSEIRILRDHHRGCISVCKRTRPDLC 160