Miyakogusa Predicted Gene
- Lj4g3v2378400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2378400.1 Non Characterized Hit- tr|I3SKC9|I3SKC9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,34.41,0.0000000005,no description,NULL,gene.g56798.t1.1
(155 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g040270.1 | cyclin-like F-box protein | LC | chr6:14439367... 60 8e-10
Medtr7g115270.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 55 2e-08
Medtr2g007400.1 | F-box/RNI/FBD-like domain protein | LC | chr2:... 55 3e-08
Medtr7g056417.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 54 4e-08
Medtr5g012840.1 | F-box/RNI/FBD-like domain protein | LC | chr5:... 54 7e-08
Medtr5g061680.1 | F-box/RNI superfamily protein | LC | chr5:2561... 52 2e-07
Medtr7g060470.1 | F-box/RNI/FBD-like domain protein | HC | chr7:... 50 7e-07
Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 49 1e-06
Medtr7g056020.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 48 4e-06
>Medtr6g040270.1 | cyclin-like F-box protein | LC |
chr6:14439367-14438141 | 20130731
Length = 381
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 60/179 (33%)
Query: 26 LVVQHLDLNLYSNSPINLSSIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFS 85
L ++ L+++ N I +IF+C+TLV+L+L L LN + VDLP LK LHL + F
Sbjct: 113 LCIEEFHLSMHGN--ILNDTIFTCQTLVILKLDMLQLNAENLFVDLPKLKTLHLSFVRFK 170
Query: 86 EREYLAEL------LEDLKIY--------------------------------------- 100
+ L +L LEDL+ Y
Sbjct: 171 NQNVLQQLLNASPNLEDLRTYDILHMEHYENSVLERVKSMSLARFVRTEIGAIDVPYNVV 230
Query: 101 -----FRLYETQW-------MYSNTLTHVELVYRYYNPDWSQVAELLSHCPKLQVLVIN 147
+Y+ + M+ N L H++L + ++ P W + + L HCPKLQ+L IN
Sbjct: 231 KNVEFLSIYDAERIIFKSFPMFQN-LIHIKLQFYWFFPGWDGIVQFLQHCPKLQILYIN 288
>Medtr7g115270.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:47606750-47605321 | 20130731
Length = 399
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 18/113 (15%)
Query: 28 VQHLDL-----NLYSNSPINLS---SIFSCRTLVVLRLQWLDLNQFSSV---VDLPFLKV 76
+Q+L+L NL +S I L SIFSCRTL+VL L+ L +N S V VD PFLK
Sbjct: 114 IQNLNLEMSCTNLQMSSRIILKLPRSIFSCRTLIVLHLKGLKVNDLSHVAVAVDFPFLKT 173
Query: 77 LHLQDLYFSEREYLAEL------LEDLKI-YFRLYETQWMYSNTLTHVELVYR 122
LH+ + F EY +L LE+L+ Y R+ +W+ S + V +R
Sbjct: 174 LHMSYILFESIEYFVQLLSGCLILEELQAEYIRVSNIEWLVSQEMFVVREKFR 226
>Medtr2g007400.1 | F-box/RNI/FBD-like domain protein | LC |
chr2:975754-973634 | 20130731
Length = 406
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 66/199 (33%)
Query: 12 MLLDFTKCKFDWFHLVVQHL--DLNLYSNSPIN----------LSSIFSCRTLVVLRLQW 59
+LLD K W +VV+ +++LY + P+N +SSI SC TLVVL+L+W
Sbjct: 103 LLLDGIKNIHKWVDIVVKSKVQNIHLYPHVPLNGEETILPKFPMSSILSCTTLVVLKLRW 162
Query: 60 LDLNQFSSV-VDLPFLKVLHLQDLYFS-EREYL-----AELLEDLKIYFRLYETQWMYS- 111
+L S + + LP LK LHL+++YF +R+++ +LEDL++ + Q +S
Sbjct: 163 FNLTVVSDLSIRLPSLKTLHLKEIYFDQQRDFMMLLDGCPVLEDLQLCYIYMTRQSHHSL 222
Query: 112 --------------------------NTLTHVELVY----RYYNP--------------- 126
+L+++E + Y+P
Sbjct: 223 DDFESSSMLKKLNRADITDCECYFPVKSLSNLEFLRIKLSEVYHPRDFPTFNNLTWLVLN 282
Query: 127 -DWSQVAELLSHCPKLQVL 144
DW V ++L HCPKLQ L
Sbjct: 283 YDWDIVVQVLHHCPKLQNL 301
>Medtr7g056417.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:19928465-19929077 | 20130731
Length = 158
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 45 SIFSCRTLVVLRLQWLDLNQFS-SVVDLPFLKVLHLQDLYFSEREYLAELLEDLKI 99
SIFSCRTLV L L+ L +N S VVD P LK LHL + F EYL E+L I
Sbjct: 10 SIFSCRTLVSLHLKGLKVNDISHGVVDFPLLKTLHLSSVLFERFEYLVEILSGCPI 65
>Medtr5g012840.1 | F-box/RNI/FBD-like domain protein | LC |
chr5:3938589-3939909 | 20130731
Length = 318
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 40 PINLSSIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFS--EREYLAELLEDL 97
PI +S++F+CR LVVL+L+ L + +D P LK LHL +YF +L+E
Sbjct: 105 PI-ISTVFNCRNLVVLKLKSLKM-YICPQLDFPLLKTLHLDKVYFYAFSGSRFNKLIEAC 162
Query: 98 KIYFRLYETQWMYSNTLT---------------HVELVY-RYYNPDWSQVAELLSHCPKL 141
I +L T + + +T H+EL + + Y + ELL HCPKL
Sbjct: 163 PILEQLQVTDLQFGSPITTMDTYQQVYSCHNLIHIELTFIQLYQKKVKNLVELLQHCPKL 222
Query: 142 QVLVI 146
Q L +
Sbjct: 223 QDLTL 227
>Medtr5g061680.1 | F-box/RNI superfamily protein | LC |
chr5:25613253-25614498 | 20130731
Length = 326
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 34/135 (25%)
Query: 45 SIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFSEREYLAEL------LEDLK 98
+IF+ +TLVVL+L+ L + + VDLP LK+L L+++ F+ + + +L LEDL
Sbjct: 135 TIFTSKTLVVLKLERLVVKAENLCVDLPSLKILSLKEICFTYNKDIMKLLNGCPVLEDLH 194
Query: 99 IYFRLYETQWMYSNT---------------------------LTHVELVYRYYNPDWSQV 131
+ R Y T+++ N L H++L + W+ V
Sbjct: 195 TFGREY-TRFVEDNAAEGFKPLSKLHTCGTRKYFQNHPLFQNLIHIKLWLYGFIHGWNGV 253
Query: 132 AELLSHCPKLQVLVI 146
ELL CPKLQVL I
Sbjct: 254 VELLQQCPKLQVLFI 268
>Medtr7g060470.1 | F-box/RNI/FBD-like domain protein | HC |
chr7:21856705-21855313 | 20130731
Length = 393
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 28 VQHLDLNLYSNSPINLSSIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFSER 87
++HLDL L P + I S R LVVL+L+ + +F +DL LK+LHL +YF ER
Sbjct: 113 MEHLDLLLIV--PQSPCYILSFRNLVVLKLKVISFREFPITIDLASLKILHLFRVYFKER 170
Query: 88 EYLAELLEDLKI 99
YLAE L I
Sbjct: 171 WYLAEFLNGCPI 182
>Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:20001294-20000413 | 20130731
Length = 293
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 27 VVQHLDLNLYSNSPINLSSIFSCRTLVVLRLQWLDLNQFSS-VVDLPFLKVLHLQDLYFS 85
++++L+L + S SIFSC+TLVVL L + LN S VVD P LK+L L + F
Sbjct: 110 IIENLNLRMVSFRLELPRSIFSCQTLVVLHLYGISLNDVSRVVVDFPCLKILDLSGVIFK 169
Query: 86 EREYLAELLEDLKIYFRLYETQWMYSNTLTHVELV 120
EYL +LL I E + M + T+ +
Sbjct: 170 HAEYLPKLLSGCPI----LEAKVMVHKSFTYAPCI 200
>Medtr7g056020.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:19371398-19367647 | 20130731
Length = 638
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 36 YSNSPINLSSIF--SCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFSEREYLAEL 93
+S+ I+ SS F + +TL L+L+ + +NQ S+V DLP LKVLH++ + F++ EYL +L
Sbjct: 112 HSDCHISKSSAFLLTSKTLAFLKLKRITINQVSNV-DLPSLKVLHMESITFADGEYLTKL 170
Query: 94 L 94
L
Sbjct: 171 L 171