Miyakogusa Predicted Gene

Lj4g3v2376320.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2376320.4 Non Characterized Hit- tr|F6I1P0|F6I1P0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,79.31,0.0004,no
description,NULL,CUFF.50941.4
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC | ...    49   1e-06
Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC | ...    49   1e-06

>Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC |
          chr7:85481-92086 | 20130731
          Length = 361

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 3/29 (10%)

Query: 32 GNYQ---QITKGLLEKYGPERVLDTPITE 57
          G YQ   +I+KGLLEKYGPERVLDTPITE
Sbjct: 56 GEYQGAYKISKGLLEKYGPERVLDTPITE 84


>Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC |
          chr7:86084-92086 | 20130731
          Length = 361

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 3/29 (10%)

Query: 32 GNYQ---QITKGLLEKYGPERVLDTPITE 57
          G YQ   +I+KGLLEKYGPERVLDTPITE
Sbjct: 56 GEYQGAYKISKGLLEKYGPERVLDTPITE 84