Miyakogusa Predicted Gene

Lj4g3v2376320.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2376320.2 Non Characterized Hit- tr|I3T1L3|I3T1L3_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,71.19,0.0000000000001,G_PATCH,G-patch domain; glycine rich nucleic
binding domain,G-patch domain; G-patch,G-patch domain; ,CUFF.50941.2
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115255.3 | DExH-box splicing factor-binding site protein ...    82   9e-17
Medtr1g115255.2 | DExH-box splicing factor-binding site protein ...    82   2e-16
Medtr1g115255.1 | DExH-box splicing factor-binding site protein ...    81   3e-16
Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC | ...    49   1e-06
Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC | ...    49   1e-06

>Medtr1g115255.3 | DExH-box splicing factor-binding site protein |
          HC | chr1:51947092-51951240 | 20130731
          Length = 127

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 2  LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADKGKKKAVKSDDSNVSEGNYQQI 61
          LLKK GWKEG GLGISEQGRLEP+ET VKNNKRGLGAD  KKK VK    + S+G+ +Q+
Sbjct: 21 LLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGDSSKGDNKQV 80


>Medtr1g115255.2 | DExH-box splicing factor-binding site protein |
          HC | chr1:51947201-51951240 | 20130731
          Length = 134

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 47/59 (79%)

Query: 2  LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADKGKKKAVKSDDSNVSEGNYQQ 60
          LLKK GWKEG GLGISEQGRLEP+ET VKNNKRGLGAD  KKK VK    + S+G+ +Q
Sbjct: 33 LLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGDSSKGDNKQ 91


>Medtr1g115255.1 | DExH-box splicing factor-binding site protein |
          HC | chr1:51947080-51951240 | 20130731
          Length = 122

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 47/59 (79%)

Query: 2  LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADKGKKKAVKSDDSNVSEGNYQQ 60
          LLKK GWKEG GLGISEQGRLEP+ET VKNNKRGLGAD  KKK VK    + S+G+ +Q
Sbjct: 21 LLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGDSSKGDNKQ 79


>Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC |
          chr7:85481-92086 | 20130731
          Length = 361

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 3/29 (10%)

Query: 56 GNYQ---QITKGLLEKYGPERVLDTPITE 81
          G YQ   +I+KGLLEKYGPERVLDTPITE
Sbjct: 56 GEYQGAYKISKGLLEKYGPERVLDTPITE 84


>Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC |
          chr7:86084-92086 | 20130731
          Length = 361

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 3/29 (10%)

Query: 56 GNYQ---QITKGLLEKYGPERVLDTPITE 81
          G YQ   +I+KGLLEKYGPERVLDTPITE
Sbjct: 56 GEYQGAYKISKGLLEKYGPERVLDTPITE 84