Miyakogusa Predicted Gene

Lj4g3v2375050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2375050.1 Non Characterized Hit- tr|D0N6P6|D0N6P6_PHYIT
Putative uncharacterized protein OS=Phytophthora infes,32.35,3e-16,RNA
METHYLTRANSFERASE,NULL; alpha/beta knot,NULL; no description,NULL;
SpoU_methylase,tRNA/rRNA meth,CUFF.50895.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118420.1 | tRNA/rRNA methyltransferase SpoU family protei...   367   e-102
Medtr7g012240.1 | tRNA/rRNA methyltransferase SpoU family protei...    54   1e-07

>Medtr4g118420.1 | tRNA/rRNA methyltransferase SpoU family protein |
           HC | chr4:49052546-49055219 | 20130731
          Length = 218

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/220 (85%), Positives = 201/220 (91%), Gaps = 2/220 (0%)

Query: 1   MGWESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNSFGSHGSSNHLRFRHFHS 60
           M +ESYVVVHNIAKRHNVGTLARSATAFGV+ELILVGRRDFNSFG+HGSSNHLRFRHFHS
Sbjct: 1   MVFESYVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSSNHLRFRHFHS 60

Query: 61  LQDARHYLKHERDCDICGVEITDDALPVNHQPFSKNTAFLLGNEGSGLSPKEVEICDFFV 120
           LQDA+H+LK ++DCDICGVEIT DALPVN  PF KNTAFLLGNEGSGLS KE EICDFFV
Sbjct: 61  LQDAKHFLK-DKDCDICGVEITHDALPVNQHPFKKNTAFLLGNEGSGLSMKECEICDFFV 119

Query: 121 YIPQYGGGTASLNVTVAASIVLHHFAVWAGFDERSRDGNKFVVAERPVKQSRRNYCAEAE 180
           YIPQYG GTASLNVTVAASIVLH F VWAGF ERSRDGNKFVVAERPVK  RRNYC E +
Sbjct: 120 YIPQYGCGTASLNVTVAASIVLHQFGVWAGFAERSRDGNKFVVAERPVKHGRRNYCTETD 179

Query: 181 ESVIEERKARRENAANGGFFDETESGNSSSSLLDALFVDG 220
           +SVIEER+ARRENAAN GFF+E ES NSSS+LLDALFVDG
Sbjct: 180 DSVIEERRARRENAAN-GFFEEAESSNSSSNLLDALFVDG 218


>Medtr7g012240.1 | tRNA/rRNA methyltransferase SpoU family protein |
           HC | chr7:3456747-3461056 | 20130731
          Length = 322

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 7   VVVHNIAKRHNVGTLARSATAFGVTELILVG-----RRDFNSFGSHGSSNHLRFRHFHSL 61
           +VV  +    NV    RSA A GV  + +V      R   N   S G+   L    + S 
Sbjct: 131 LVVEGLCDFGNVSAAFRSADALGVQSVHVVSSDANKRYKDNRHVSMGAEKWLDIELWDST 190

Query: 62  QDARHYLKHERDCDICGVEITDDALPVNHQPFSKNTAFLLGNEGSGLSPKEVEICDFFVY 121
           ++    LK  R   I    +  DA+ +    +S  TA ++GNE  G+S + + + D    
Sbjct: 191 KECFEMLK-SRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALAMSDLHCS 249

Query: 122 IPQYGGGTASLNVTVAASIVLHHFAVWAGFDERSRDGN--KFVVAERPV 168
           IP   G   S NV+VAA I++HH    A  D  SR G      V ER +
Sbjct: 250 IPM-KGMVDSFNVSVAAGILMHH----AVCDRISRTGRHGDLTVEERQI 293