Miyakogusa Predicted Gene

Lj4g3v2374790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2374790.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,54.51,0,seg,NULL,CUFF.50916.1
         (1627 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118720.1 | SNF2 family amine-terminal protein | HC | chr4...   859   0.0  

>Medtr4g118720.1 | SNF2 family amine-terminal protein | HC |
            chr4:49190490-49169826 | 20130731
          Length = 3282

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1184 (48%), Positives = 674/1184 (56%), Gaps = 150/1184 (12%)

Query: 1    MKISD-VPNVGVESNGVKRKSGSVGGPDTQHYGRGKRAREVRSYEEQWTEEEFDKMCQSE 59
            MKI D VP   ++SNGVKRK G++GGPDTQHYGRGKRAREVRSYEEQWTEEEF+KMCQ+E
Sbjct: 1576 MKIYDDVPKGEIDSNGVKRKRGALGGPDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQTE 1635

Query: 60   STDSPKVKEVVAEMGXXXXXXXXXXXXXXXLPVAMPLLAPILPPV--------------E 105
            + DSPKVK   +E+                 P A+P +AP+LPPV              E
Sbjct: 1636 TPDSPKVKG--SEVSHPTNTTGSVVSATVKKPAAVPPVAPMLPPVAPILPSVVPILPSVE 1693

Query: 106  SLPVQKAKEITXXXXXXXXXXXXITSDRSPAAMIPPATSGSVEVHMQLLKGNGSRGLTSS 165
            SLPVQ  KEIT            I SD+SPAA+IPP TS   EV +Q  KGN    LTSS
Sbjct: 1694 SLPVQHVKEITPPAKRGRGRPKRIASDKSPAAVIPPVTSRIAEVQLQ--KGNEPGHLTSS 1751

Query: 166  TPD----SAEPMGVSGPIQPSDSGAXXXXXXXXXXXXXXXNSQYAA-------------- 207
             PD    SAE  GV GP+Q S +G                NSQ AA              
Sbjct: 1752 APDTVGHSAEVTGVGGPMQQSTTGVTANIPPATPMPTNPLNSQSAATPMPTNTGPVQQSN 1811

Query: 208  ----------------ATTISVPIQARGQGQKIQXXXXXXXXXXKKQVMXXXXXXXXXXX 251
                            +   SVPI A+G+G+K Q          KKQV+           
Sbjct: 1812 TEVAANVLSATPMLSQSAAASVPIHAKGRGRKTQSGREWPRRRGKKQVVMSPPVPASSVG 1871

Query: 252  XDIKVGEQLEDKLASPSKSQAISQCEIVSSISAVNSPTTITSSASLNCGKDNLGVGSDXX 311
             D+K+ EQLEDK+ SPS  Q I Q E V S +AV+ PT ++ SAS NCG DNLGV     
Sbjct: 1872 PDVKINEQLEDKIVSPS-GQVIPQSETVPSATAVHHPTAVSVSAS-NCGNDNLGVDV-VL 1928

Query: 312  XXXXXXXXXXXXXXXXQTSPTYPSIQMQSKRQNRKSQIGAGTPRRRGKKQETLSP-VPDA 370
                             T P+ PS+QMQSK Q  KSQ+GAGTPRRRGKKQ T+SP VP  
Sbjct: 1929 NSQLPLLPLPSVTTLSPTVPSDPSVQMQSKGQIGKSQVGAGTPRRRGKKQATMSPPVPVV 1988

Query: 371  LGHQCLNQTSNXXXXXXXXXXDKTTELKSLQENNAQEPKCVFQDQALQSQGDQDLKSMEG 430
            LG Q ++ TSN          DK TEL +L ENN QE KC+ QDQA  SQ +Q LK+++ 
Sbjct: 1989 LGLQSMDPTSNLPTSSDAVSGDKRTELSNLLENNVQESKCIIQDQA--SQNNQALKTLDE 2046

Query: 431  SDDLAKQTMILSSCKDSTIKSPGNDLEKVNNPDVRDSSVNVKSSEIPSSKIEVCDNSGNE 490
            SDDLAKQ +I  SC+DST+ S G DLEKV N DV DSSV + SSE   SKI VCDNS NE
Sbjct: 2047 SDDLAKQAVISPSCEDSTVNSQGQDLEKVKNADVHDSSVKINSSETTPSKIAVCDNSENE 2106

Query: 491  NLSVPTLPIAEVTTDQHSEAKAHETVEASKTDTSIVDTPTNSLAGSTTIEIISKPLDHVT 550
            +LSV TL   EVT DQHS+ K H+T  ASK   S+VD  TNSLAGS T E IS+ +D VT
Sbjct: 2107 SLSVTTLATTEVTKDQHSDDKIHQTAVASKISPSVVDPQTNSLAGSATTESISQSVDPVT 2166

Query: 551  AKIVPAILNNVYXXXXXXXXXXXXLHESLSSKRQGRKTQNRVEPPRRRGRKSASVLPVVP 610
            AKIVP+ L  VY             +ES+S+KRQGRKTQNR+EPPRRRG+KSA  LPV  
Sbjct: 2167 AKIVPSTLTTVYPSPPGSESNPSS-YESVSAKRQGRKTQNRLEPPRRRGKKSAPALPVAS 2225

Query: 611  DALSGQDLKLSHHAHNSSGDALEGKATTNVTQTQAIEILLPSGVASQDSKRKERASNSTQ 670
            DAL GQD KLSHHA  S  ++L G  T+NVTQ +A+E+LLPSGVA+ DSKRK+R +N  Q
Sbjct: 2226 DALIGQDPKLSHHAQISPVNSLVGIDTSNVTQAKALEVLLPSGVAN-DSKRKQRTTNPAQ 2284

Query: 671  NKQQKAGSTRADSATVSSDKIAAFGRIHNVNDVARVMKEVFSGTCLPKPKAHDSLGSEDR 730
            NKQQK  S R DSA VSSDK+A FGRI NVNDVARVMKEVFSGTCLPKPK+HD +GSEDR
Sbjct: 2285 NKQQKVASPRIDSAPVSSDKVAPFGRIQNVNDVARVMKEVFSGTCLPKPKSHDPIGSEDR 2344

Query: 731  NPPIFHVVTKAAVDAGSNCSLEEKACADGNVAVDGHEKQSDMQNLKGKASLDASTAFTSD 790
            N P  HV TKAA DA                        S  Q+++ KA  D  TA    
Sbjct: 2345 NTPFVHVTTKAAADA------------------------SGSQSVEDKACSDIETAGV-- 2378

Query: 791  KKITLENDTLSNVRERETKCSLEEKACSDGNVAVDGHEKQSEL--ASDMQNLKGIASLDT 848
                                      C  GNVAV+  EKQSE   ASDMQNL+G  SLD 
Sbjct: 2379 -------------------------VCQTGNVAVNVDEKQSEGEGASDMQNLEGKPSLDA 2413

Query: 849  STA-------------------FTSDKKLTLENDTLLNVREPETKCYVEVEEKTEQPQQC 889
             T                      SDK + LEN  L NV +PET C  EV+ K EQ Q  
Sbjct: 2414 PTTGAPSLAPAMPVKGNKQESDIASDKNMILENMDLPNVSKPETICSGEVKAKAEQTQYY 2473

Query: 890  IKNPTTQSIMEVLDTT-LNAAQISDGHPERLPT-GC--------GP-TIYSSVVSPSAKP 938
            I+N TT+S ME LD T LN  Q  DG  ERL T GC         P  I  S  SP A+P
Sbjct: 2474 IENSTTKSEMEALDITPLNDEQKIDGSSERLRTSGCCTDISIETAPHEIGLSAASPVAEP 2533

Query: 939  LAVTDHNLGNQXXXXXXXXXXXPLDIGGTGGATXXXXXXXXXXXXXXSKGEACRQSNSST 998
              V DHNLG+Q           P+ I GTG +T              S+ + C QS+ S 
Sbjct: 2534 PLVGDHNLGSQSDSLEKCSRSSPVAIDGTGCSTNPLGPEIYSNNPESSQADICVQSHLSA 2593

Query: 999  NEHPNITEHTSNKKLESSEPCQKSSPLACGDNTGLLAQAENLSDQPQVTISNPAEHHHLR 1058
            NE P+I E+TSN+KLE SEP   SS  AC DNT L  QAE LSDQP+VT  +PA     R
Sbjct: 2594 NEAPDIIENTSNEKLEPSEP---SSSFACADNTSLFGQAEILSDQPKVTPPSPAVDPQSR 2650

Query: 1059 TMI---ISEHTEINSRNETESSSKASDELSVDEGIDGCKTSASA 1099
            T++   ISE  EINSR+ETESS KAS ELS+ EGI G K SAS 
Sbjct: 2651 TIVISTISESAEINSRSETESSLKASAELSLGEGIVGDKISASG 2694