Miyakogusa Predicted Gene

Lj4g3v2371690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2371690.1 tr|C1E813|C1E813_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59212
,25.2,0.0003,no description,NULL; F-box domain,F-box domain,
cyclin-like; A Receptor for Ubiquitination Targets,F,CUFF.50846.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118790.1 | F-box-like protein | HC | chr4:49217990-492219...   330   9e-91

>Medtr4g118790.1 | F-box-like protein | HC | chr4:49217990-49221953
           | 20130731
          Length = 243

 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 162/254 (63%), Positives = 191/254 (75%), Gaps = 13/254 (5%)

Query: 8   DPVPVLASLPQDVTFKITSLLQVRDLCALGCCSRFCRDLCFSDCIWESLVRTRWXXXXXX 67
           D      SLP+D+ FKI SLLQVRDLCALGCCS+F R LCFSD IW SLV  RW      
Sbjct: 3   DSSSFFISLPEDINFKIASLLQVRDLCALGCCSKFWRKLCFSDSIWHSLVTNRWPLLHSS 62

Query: 68  XXXXXXXXXXXXXXXXNPKKWRKFYFERHVELGLRARTVEMFLKACSPSESLEVGDYLKA 127
                             K WR+ Y ERHVELG+RA +VE FLKACS +ESLEVGDYL+A
Sbjct: 63  LSPYI-------------KTWRRLYVERHVELGIRAGSVERFLKACSRNESLEVGDYLQA 109

Query: 128 VDTLVGLRFGFEDIQRYLFNPKMNVLINLVGLHYCLSSLGIRGENLLEVLRTCEISDRRV 187
            + + G RFGFEDIQR+LF P+MNVL+NLVG+HYC++SLGI G++L+E LRTCEIS+R V
Sbjct: 110 FEIINGARFGFEDIQRFLFKPQMNVLLNLVGVHYCMTSLGIPGDDLVEALRTCEISNRHV 169

Query: 188 VVKWWKLGRWLHGYRMRDEFHSRWVSLADLATQDDGNVLGVLRRGTIHEVLRVQISAVGH 247
            VKWWKLGRW++GYR RDE   RWVSLADLAT+D  +VLGVLRRGT+HEVLRVQISA+GH
Sbjct: 170 CVKWWKLGRWIYGYRGRDELLFRWVSLADLATEDGESVLGVLRRGTVHEVLRVQISAIGH 229

Query: 248 TTTSWSYQLTHRLQ 261
            +  WSYQ+T RL+
Sbjct: 230 KSIPWSYQVTQRLE 243