Miyakogusa Predicted Gene

Lj4g3v2371650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2371650.1 tr|B9P6U2|B9P6U2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_593580 PE=3
SV=1,56.76,1e-18,INTEGRAL MEMBRANE FAMILY PROTEIN,NULL; NITRATE,
FROMATE, IRON DEHYDROGENASE,NULL; seg,NULL; A_tha_TI,CUFF.50841.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118810.1 | plant integral membrane protein | HC | chr4:49...   208   2e-54
Medtr2g020060.1 | plant integral membrane protein | HC | chr2:66...   149   2e-36
Medtr7g108130.1 | plant integral membrane protein | HC | chr7:43...   113   1e-25
Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...    86   2e-17
Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    74   1e-13
Medtr4g118800.1 | plant integral membrane protein | HC | chr4:49...    71   7e-13
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3...    60   1e-09
Medtr7g083120.1 | plant integral membrane protein | HC | chr7:31...    60   1e-09
Medtr5g041900.1 | casparian strip membrane protein | HC | chr5:1...    50   1e-06
Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    48   4e-06

>Medtr4g118810.1 | plant integral membrane protein | HC |
           chr4:49234116-49235835 | 20130731
          Length = 200

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 129/170 (75%), Gaps = 8/170 (4%)

Query: 1   MEGQGKAMMMEGVENSKGREKAAV------GGACDXXXXXXXXXXXXXXXIVVGVDNHTK 54
           MEG+GKA++ +GVE + GR++ A+      GG+C+               IVVG D  T 
Sbjct: 1   MEGRGKAII-DGVEGNYGRDELAMKKPPAGGGSCELVLRFLGFVLTLAAAIVVGTDKQTT 59

Query: 55  VVPIKILDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAIINKGKSRGL-G 113
           +VPIK++D LPP+NV V AKWHYLSAFVYFLVANAIA TYGA S++L ++N+GKS+   G
Sbjct: 60  IVPIKVVDSLPPLNVAVSAKWHYLSAFVYFLVANAIACTYGAISMLLTLLNRGKSKVFWG 119

Query: 114 SLITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCHQ 163
           +LIT+ DALMVALLFSGNGAA+A+GVLGY GNSHV+WKKVCNVFD +CHQ
Sbjct: 120 TLITIFDALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCNVFDKYCHQ 169


>Medtr2g020060.1 | plant integral membrane protein | HC |
           chr2:6650859-6647324 | 20130731
          Length = 189

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 5/163 (3%)

Query: 1   MEGQGKAMMMEGVENSKGREKAAVGGACDXXXXXXXXXXXXXXXIVVGVDNHTKVVPIKI 60
           ME Q    + E V       K+++ G C                +V+  D  T VVP+KI
Sbjct: 1   MEVQSTKELKENVV-----IKSSLEGTCSMVLRLCALVLTLTAAVVLVADKQTTVVPVKI 55

Query: 61  LDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAIINKGKSRGLGSLITVLD 120
            D LPP++VPV AKW Y+SA+VYF+VAN IA  Y   S V+A+ N  KS+ L +L+T+LD
Sbjct: 56  SDSLPPLDVPVTAKWQYVSAYVYFVVANFIAFAYATLSFVIALANGHKSKLLVTLVTLLD 115

Query: 121 ALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCHQ 163
           A+MVALLFSGNGAA A+GVL   GNSHV W KVC+VFD FC+Q
Sbjct: 116 AIMVALLFSGNGAAWAIGVLAEKGNSHVMWNKVCHVFDKFCNQ 158


>Medtr7g108130.1 | plant integral membrane protein | HC |
           chr7:43972040-43974109 | 20130731
          Length = 191

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 75/120 (62%), Gaps = 7/120 (5%)

Query: 45  IVVGVDNHTKVVPIKILDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAII 104
           I+VG    TKV+          +   V AKW Y+SA V+FLV NAI  +Y A S+V++ I
Sbjct: 46  IIVGFGKETKVIS------YASLQFKVTAKWEYMSAIVFFLVTNAIGCSYAAISMVVSTI 99

Query: 105 NKGKSRGLGSL-ITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCHQ 163
            +        L IT+LD +++ALLFS NGAA AVGVLG  GNSHVQW KVCNVFD +C  
Sbjct: 100 ARTSGNKTALLMITLLDLVIMALLFSANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRH 159


>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 45  IVVGVDNHTKVVPIKILDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAII 104
           +V+ ++  TK   +  + G  P+ VP+ AK+ +  AFVYF+V N I S +    + + I+
Sbjct: 43  LVMSLNKQTKTFVVATI-GSTPITVPLTAKFQHTPAFVYFVVPNGIVSLHNLVMIAMYIL 101

Query: 105 N-KGKSRGLG-SLITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCH 162
             K  ++GL  +LI V D + +AL  SG+GAA+A+  LG  GNSH +W K+C+ F+++C+
Sbjct: 102 GPKFHNKGLQLALIAVFDTMALALASSGDGAATAMSELGRNGNSHAKWNKICDKFESYCN 161

Query: 163 Q 163
           +
Sbjct: 162 R 162


>Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0097:39509-37693 | 20130731
          Length = 201

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 3/121 (2%)

Query: 45  IVVGVDNHTKVVPIKILDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAII 104
           +V+ ++  TK   I  + G  P+   + AK++   AFV+F++AN  AS +    + L I+
Sbjct: 44  LVMALNKQTKSFVIGTV-GNTPLTATLSAKFNQTPAFVFFVIANGNASLHNLVMIALDIL 102

Query: 105 N-KGKSRGLG-SLITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCH 162
             +   +GL  +LI +LD L +AL  +G+GAA+ +  LG  GNSH +W K+C+ F+++C+
Sbjct: 103 GPQYDYKGLRLALIAILDMLTMALASAGDGAATFMSALGRNGNSHARWDKICDKFESYCN 162

Query: 163 Q 163
           +
Sbjct: 163 R 163


>Medtr4g118800.1 | plant integral membrane protein | HC |
           chr4:49224515-49222579 | 20130731
          Length = 187

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 69  VPVPAKWHYLSAFVYFLVANAIASTYGAFS--LVLAIINKG--KSRGLGSLITVLDALMV 124
           VP PAK+ Y  AFVYF+ A ++A  Y   +  + L+ I K   K++ L  LI   DA+M+
Sbjct: 58  VPRPAKFRYSPAFVYFVAAFSVAGLYSIITTFISLSAIRKPNLKTKLLLHLI-FWDAVML 116

Query: 125 ALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCHQ 163
            +L S  G A +V  LG  GN H  W K+C+++D FC  
Sbjct: 117 GILASATGTAGSVAYLGLKGNKHTDWHKICHIYDKFCRH 155


>Medtr4g081880.1 | casparian strip membrane protein | HC |
           chr4:31869526-31871135 | 20130731
          Length = 189

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 74  KWHYLSAFVYFLVANAIASTYGAFSLVLAIINKGKSRGLGS--LITVLDALMVALLFSGN 131
            +H L  F++F+ AN+I   Y A SLVL+  +  ++  + S  L+  LD +M  LL SG 
Sbjct: 67  SFHDLPTFLFFVTANSIVCGYLALSLVLSFFHIVRTISVKSRILLVFLDTVMFGLLTSGA 126

Query: 132 GAASAVGVLGYYGNSHVQWKKVCNVFDNFC 161
            AA+A+  + +YGN    W   C  +++FC
Sbjct: 127 SAAAAIVYVAHYGNPSANWFPFCQQYNSFC 156


>Medtr7g083120.1 | plant integral membrane protein | HC |
           chr7:31937630-31935708 | 20130731
          Length = 186

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 45  IVVGVDNHTKVVPIKILDGLPPVNVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAII 104
           IVV V N+  V+   I            A ++Y S+F +F+ AN +       +L+  ++
Sbjct: 46  IVVTVTNNQSVMLFSI---------RFEAHFYYTSSFKFFVAANGVVCFMSVLTLIFNLL 96

Query: 105 NKGKS---RGLGSLITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFC 161
            + ++   +    L+ ++D +M  LL +G  AA+AVG +G YG  HV W  +C+    FC
Sbjct: 97  MRQQTPQRKDYYFLLFLVDLVMTVLLIAGCSAATAVGYVGQYGEKHVGWTAICDHVQKFC 156


>Medtr5g041900.1 | casparian strip membrane protein | HC |
           chr5:18399261-18401571 | 20130731
          Length = 186

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 45  IVVGVDNHTKVVPIKILDGLPPVN---VPVPAKWHYLSAFVYFLVANAIASTYGAFSLVL 101
           I+ GV      V +   D   P     V   A++  L +FV+F++AN+I   Y A SL+L
Sbjct: 34  IIAGVATLASAVAMGTTDERLPFATSFVQFRAEYDDLPSFVFFVLANSIVCGYLALSLIL 93

Query: 102 AIINKGKSRGLGS--LITVLDALMVALLFSGNGAASAVGVLGYYGNSHVQWKKVCNVFDN 159
           +I++  +S  + S  L+ VLD +M+ LL +   AA+++  + +YGN+   W  +C  +++
Sbjct: 94  SILHIVRSTAVKSRILLIVLDMVMMGLLAAAASAAASIVYIAHYGNTQANWFPICQQYNS 153

Query: 160 FCHQ 163
           FC +
Sbjct: 154 FCER 157


>Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0004:83573-81269 | 20130731
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 68  NVPVPAKWHYLSAFVYFLVANAIASTYGAFSLVLAIINKGKSRGLGSLITVLDALMVALL 127
            V   AK+    AF YF++AN+I + YG F L L          L  L+  +D ++  LL
Sbjct: 38  TVSFEAKYTNSPAFKYFVIANSIVTVYGFFVLFL-----PAESLLWRLVVAMDMVLTMLL 92

Query: 128 FSGNGAASAVGVLGYYGNSHVQWKKVCNVFDNFCHQ 163
            S   AA A+  +   GN++  W  +C     FC+ 
Sbjct: 93  ISSISAALAIAQVAKNGNNYAAWLPICGSVPKFCNH 128