Miyakogusa Predicted Gene

Lj4g3v2314750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2314750.1 tr|B9HXV1|B9HXV1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1089189 PE=4
SV=1,45.38,6e-18,seg,NULL,CUFF.50778.1
         (703 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g119910.1 | 50S ribosome-binding GTPase | HC | chr4:496953...   380   e-105
Medtr8g088370.1 | import component Toc86/159, G and M domain pro...    72   2e-12

>Medtr4g119910.1 | 50S ribosome-binding GTPase | HC |
           chr4:49695339-49692130 | 20130731
          Length = 888

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 291/626 (46%), Positives = 355/626 (56%), Gaps = 109/626 (17%)

Query: 105 VPLRVAPFAQLSTYDDDTSSDG--------MSSASRMAEDSVGVHRLKVRNVXXXXXXXX 156
           VPLRV PFA LSTYDD+  ++         + +  R+ E+ V   R+KV +V        
Sbjct: 86  VPLRVTPFAHLSTYDDEEENEDDDEEDGGEIMNVVRVPENVVLAPRIKVLDVEKEN---- 141

Query: 157 XXXXXXXXXNELAFCSDSGSDSYSEAENDGADVRIDEVVAVDEHGLGEVVGIRVAQDGYS 216
                          SDSGSD                 V++D    GE +GIRVA DG S
Sbjct: 142 ---------------SDSGSD-----------------VSID----GEGIGIRVACDGDS 165

Query: 217 TSN--NADVMSQCSQESVNNEEFGNVRGGFEELEKDGRELY-----EGIATGLIGTDV-- 267
           T+   ++DVMSQ S++ + NE+FG V   F E+E D  +LY     +GI   LI TD   
Sbjct: 166 TATATDSDVMSQYSRDGLENEQFGKVSVAFNEIENDDMKLYGLDRDDGIRDELIETDNVM 225

Query: 268 -RKLEVGTNDPTDMVEETSIMVDDTGSLKFNAEDYDNIIIMPAQITSFGYLQEQTSQIHS 326
              L+V T   TD VEETS   +    L+F+ E Y N I++    TS GYL++      S
Sbjct: 226 ESNLQVET---TDTVEETS---NANNLLEFDVEGYVNSIMLEHN-TSAGYLEQNPETGES 278

Query: 327 MEDGPASDAFAENIECCTTTARGETLDPELEFDVIDDLIVPQNALRSESVIEAKDKIVVD 386
           +     SDAF ENIE      +                   +N   + + I++       
Sbjct: 279 L-----SDAFDENIEYFLEHCQ-------------------ENVEDNTTTIQS------- 307

Query: 387 LVVPANGSQG-VSSDQESECEKLVNTTTSLIDSKAELQDPSADLEPSNDACEGNVIEAVE 445
             +  NG Q  V+S QE E EKLV+ T  + DSK  L D S   E ++   EGN I+ VE
Sbjct: 308 --IATNGGQSDVASHQECESEKLVSVTDYVDDSKDMLHDSSVGFESNDGVSEGNEIQGVE 365

Query: 446 SFELSDPILLQEYAYLENDLSRAVLGVVQQDELFSDYHPHENVETHSLGDTL-------L 498
             ELSDP L +E  YL+N LS   L  + +D LF DYH HEN ET + GD +       L
Sbjct: 366 YSELSDPALFEECKYLKNGLSETGLDFILKDGLFCDYHSHENAETFNFGDNVNEEATMEL 425

Query: 499 KIVSQESKRDDGSASDGCVEQLMSVDLDQFREHISALSILLGSSKGSEKNSLGEQIVRSS 558
             VSQESKRD  S  D  VE+LMSV L+QFRE ISALS LLGS  GS KN   E+ V S 
Sbjct: 426 NTVSQESKRD-SSDLDEDVEELMSVRLEQFREQISALSTLLGS-IGSGKNCHQEETVTSP 483

Query: 559 HGGMNLANDDVKSQLIYVDGGGELD-GKVTFTYADESSVIFLKDPAYFSSSPHYDAQIEF 617
           HG MNLA DDV+SQLIY D  GE D  +VT TYAD+S V+FLK PA  SS P  DAQ+ F
Sbjct: 484 HGRMNLAKDDVRSQLIYFDSVGESDCNRVTVTYADQSDVLFLKGPASLSSLPGGDAQVWF 543

Query: 618 QHNSSEQEGETIQKIQTISVKFLRLLQRVNLSFEDSLVSKVLCRLVADIGRRSHQEFVIS 677
           QHN SE E E I +IQT+SV+FLRL+QR+N S EDSLVSKVLCRLVADI RRSHQEFVIS
Sbjct: 544 QHNISENEKEKIHEIQTMSVEFLRLVQRINFSLEDSLVSKVLCRLVADIERRSHQEFVIS 603

Query: 678 SAKISAMMLEEDCQDDLDFSLNILVL 703
           SAKI A  LEED +DDLDFSLNILVL
Sbjct: 604 SAKILAKKLEEDLEDDLDFSLNILVL 629


>Medtr8g088370.1 | import component Toc86/159, G and M domain
           protein | HC | chr8:36605419-36610672 | 20130731
          Length = 1387

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%)

Query: 602 PAYFSSSPHYDAQIEFQHNSSEQEGETIQKIQTISVKFLRLLQRVNLSFEDSLVSKVLCR 661
           P  F  S      +    N S +E   ++K+Q I +K+LR++QR+  + E+S+V++VL R
Sbjct: 647 PNLFGPSMSRAGTVVSDTNLSVEEKMKLEKLQEIRIKYLRMVQRLGFTTEESIVAQVLYR 706

Query: 662 LVADIGRRSHQEFVISSAKISAMMLEEDCQDDLDFSLNILVL 703
                GR++ + F + +AK SA  LE + + D  FS+NILVL
Sbjct: 707 FTLAAGRQTGENFSLDAAKESASRLEAEGRGDFGFSINILVL 748