Miyakogusa Predicted Gene

Lj4g3v2314740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2314740.1 tr|B9NAH1|B9NAH1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_828725 PE=4
SV=1,31.11,0.00000000000002,seg,NULL; coiled-coil,NULL,CUFF.50779.1
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g119920.1 | hypothetical protein | HC | chr4:49696694-4969...   172   4e-43

>Medtr4g119920.1 | hypothetical protein | HC |
           chr4:49696694-49699737 | 20130731
          Length = 564

 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 156/287 (54%), Gaps = 35/287 (12%)

Query: 1   MCLVGGFVFQTIYSVWILSNYVANEKEEELEVSGRGNRNYVFDGNGKTVPVTGGGNGFDV 60
           + L+G FVFQT+  +W   N  +N    +LEV  R  RN +FDGNGKTV           
Sbjct: 124 IYLIGAFVFQTVCYLWNSRNEHSNG---DLEVGEREKRNILFDGNGKTV----------- 169

Query: 61  EHQXXXXXXXXXXXXXAREVRRXXXXXXXXXXXXXXXXXXXXXXXNRFGIEKEIGARLLK 120
                           ARE RR                          GIEKEIG RLLK
Sbjct: 170 -EDQVLEKRIEEIKLMAREARRIELLEKQGKGEEEENGDPEID-----GIEKEIGERLLK 223

Query: 121 LKGRISDSDKDSSAALRGNARGNSAAGIARDGNKDVNQGNEALVFKKKFKYRSPSTKVKK 180
           LK RI  S+KDSSAALR N RGNS      DG+  VNQG E LVFKKK K++SPSTK  +
Sbjct: 224 LKNRIK-SNKDSSAALRLNGRGNSD----EDGDMSVNQGIEELVFKKKSKFKSPSTKATR 278

Query: 181 ASKGFSGTRDGKASNTIKEGSAVKSITQDSGSDATDHEGVLCEDKQVNQQNVVTDKSTSS 240
             KGF GT+D + S       +VK   QD GS  TD  G+L  DKQVNQQ+V TDK+ S 
Sbjct: 279 TPKGFPGTQDRRVS-------SVKP--QDYGSQVTDRAGILDGDKQVNQQDV-TDKNASG 328

Query: 241 VPLEESGKVVDNESREILNHGKNLEEKMETPNKKTEVPAKANSNDNG 287
           VPLEE GK VD++S EI N GKNLEE +E PN KT+      S +NG
Sbjct: 329 VPLEERGKTVDDKSGEIQNEGKNLEEMIEAPNTKTKDGVTPKSINNG 375