Miyakogusa Predicted Gene
- Lj4g3v2310320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2310320.1 Non Characterized Hit- tr|C5YFR4|C5YFR4_SORBI
Putative uncharacterized protein Sb06g015250
OS=Sorghu,44.44,7e-17,seg,NULL,CUFF.50745.1
(453 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g120050.1 | hypothetical protein | HC | chr4:49767136-4976... 203 3e-52
Medtr4g120050.2 | hypothetical protein | HC | chr4:49767507-4976... 203 3e-52
Medtr2g436340.1 | hypothetical protein | HC | chr2:14137352-1413... 140 3e-33
>Medtr4g120050.1 | hypothetical protein | HC |
chr4:49767136-49765740 | 20130731
Length = 445
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 182/368 (49%), Gaps = 75/368 (20%)
Query: 111 RHNRHDYHSRRTRLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKIILKRSK 170
+H H+Y+SR+TR+PF IILKRSK
Sbjct: 126 KHYHHEYYSRKTRIPFLLAKKKKKKTSVSASATS-----------------SNIILKRSK 168
Query: 171 STATPRR-RHSLIDAEDDTVDFSPRKRHGFWSFLYXXXXXXXXXXXXXXXXXXFRDSNHG 229
STATPRR +S++DA+D+ FSPRKR+GFWSFLY
Sbjct: 169 STATPRRGSNSMVDADDEY--FSPRKRNGFWSFLYHSSK--------------------- 205
Query: 230 STPNPRILAINXXXXXXXXXXXXKLKEKCCSGSSLGRKSDIVVEEDNNXXXX-XXXXXXX 288
+ KLKEKCCSGSSLGRK+DIV+ E+
Sbjct: 206 --------SSTSSKSFSNTTASAKLKEKCCSGSSLGRKNDIVIVEEEEEDNSPNSNNTGS 257
Query: 289 FERKVXXXXXXXXXXXXXXXDFFERISTGFGDCTLRRVESQREGKTK------------- 335
FERKV DFFERISTGFGDCTLRRVESQREGK+K
Sbjct: 258 FERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQREGKSKGVVASSNGIASVN 317
Query: 336 -TGENHHHNHRCMKERV--RCGGLFSGFMM--TXXXXXXXXXXXXXXXXADDAAAMNSGK 390
++HHH+H CMKERV RCGG+FSGFMM + ADDA GK
Sbjct: 318 RAQDHHHHHHHCMKERVLRRCGGIFSGFMMTSSSSSNSSTSSYWVSSNSADDAVN-GGGK 376
Query: 391 STAVALSHGGRGRSWGWAFASPMRAFXXXXXX----XXXXRDIIRDAND--KNATPNLSA 444
+V +S G+SWGWAFASPMRAF RDIIRDAND KNATPNLSA
Sbjct: 377 QGSVTVSQNRGGKSWGWAFASPMRAFSSKGSSKENHQNNRRDIIRDANDNNKNATPNLSA 436
Query: 445 IPSLLAAR 452
+PSLL+AR
Sbjct: 437 MPSLLSAR 444
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/36 (83%), Positives = 31/36 (86%), Gaps = 2/36 (5%)
Query: 15 VEDHDMGDGMQCIDHPFRNNNPGGICALCLQEKLGK 50
VED D DGMQCIDHP+RNN PGGICA CLQEKLGK
Sbjct: 18 VED-DSIDGMQCIDHPYRNN-PGGICAFCLQEKLGK 51
>Medtr4g120050.2 | hypothetical protein | HC |
chr4:49767507-49765244 | 20130731
Length = 451
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 182/368 (49%), Gaps = 75/368 (20%)
Query: 111 RHNRHDYHSRRTRLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKIILKRSK 170
+H H+Y+SR+TR+PF IILKRSK
Sbjct: 132 KHYHHEYYSRKTRIPFLLAKKKKKKTSVSASATS-----------------SNIILKRSK 174
Query: 171 STATPRR-RHSLIDAEDDTVDFSPRKRHGFWSFLYXXXXXXXXXXXXXXXXXXFRDSNHG 229
STATPRR +S++DA+D+ FSPRKR+GFWSFLY
Sbjct: 175 STATPRRGSNSMVDADDEY--FSPRKRNGFWSFLYHSSK--------------------- 211
Query: 230 STPNPRILAINXXXXXXXXXXXXKLKEKCCSGSSLGRKSDIVVEEDNNXXXX-XXXXXXX 288
+ KLKEKCCSGSSLGRK+DIV+ E+
Sbjct: 212 --------SSTSSKSFSNTTASAKLKEKCCSGSSLGRKNDIVIVEEEEEDNSPNSNNTGS 263
Query: 289 FERKVXXXXXXXXXXXXXXXDFFERISTGFGDCTLRRVESQREGKTK------------- 335
FERKV DFFERISTGFGDCTLRRVESQREGK+K
Sbjct: 264 FERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQREGKSKGVVASSNGIASVN 323
Query: 336 -TGENHHHNHRCMKERV--RCGGLFSGFMM--TXXXXXXXXXXXXXXXXADDAAAMNSGK 390
++HHH+H CMKERV RCGG+FSGFMM + ADDA GK
Sbjct: 324 RAQDHHHHHHHCMKERVLRRCGGIFSGFMMTSSSSSNSSTSSYWVSSNSADDAVN-GGGK 382
Query: 391 STAVALSHGGRGRSWGWAFASPMRAFXXXXXX----XXXXRDIIRDAND--KNATPNLSA 444
+V +S G+SWGWAFASPMRAF RDIIRDAND KNATPNLSA
Sbjct: 383 QGSVTVSQNRGGKSWGWAFASPMRAFSSKGSSKENHQNNRRDIIRDANDNNKNATPNLSA 442
Query: 445 IPSLLAAR 452
+PSLL+AR
Sbjct: 443 MPSLLSAR 450
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
Query: 1 MIHMEGIKXXXXXR------VEDHDMGDGMQCIDHPFRNNNPGGICALCLQEKLGK 50
++HME +K VED D DGMQCIDHP+RNN PGGICA CLQEKLGK
Sbjct: 4 ILHMEPMKGGGGGGGRVNIGVED-DSIDGMQCIDHPYRNN-PGGICAFCLQEKLGK 57
>Medtr2g436340.1 | hypothetical protein | HC |
chr2:14137352-14138956 | 20130731
Length = 388
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 148/353 (41%), Gaps = 71/353 (20%)
Query: 114 RHDYHSRRTRLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKIILKRSKSTA 173
+HD+HSR +R+PF I+ KRSKSTA
Sbjct: 92 KHDHHSR-SRIPFLLPKKNNKNKPSSSINMNMKPSSSANVT-------SDIVFKRSKSTA 143
Query: 174 TPRRRHSLIDAEDDTV-DFSPRKRHGFWSFLYXXXXXXXXXXXXXXXXXXFRDSNHGSTP 232
TPRR L D DD +F+ RKR+ FWSFL+ + S
Sbjct: 144 TPRRTKLLDDDGDDAEGNFNTRKRNRFWSFLHLSSSSKVPSSSYNKKSED-KSSRADINS 202
Query: 233 NPRILAINXXXXXXXXXXXXKLKEKCCSGSSLGRKSDIVVEEDNNXXXXXXXXXXXF--- 289
+PRI + K K C SS+GR D+VVEE+
Sbjct: 203 SPRISTV---------------KPKFC--SSVGRNCDMVVEEEEEEEASGSSSGSGGLDQ 245
Query: 290 -ERKVXXXXXXXXXXXXXXXDFFERISTGFGDCTLRRVESQREGK-------TKTGENHH 341
+RKV DFFE+ISTGFGDCTLRRVESQREGK + N +
Sbjct: 246 EQRKVSRSRSVGCGSRSFSGDFFEKISTGFGDCTLRRVESQREGKGSKVISSSVVAGNGN 305
Query: 342 HNHRCMKERVRCGGLFSGFMMTXXXXXXXXXXXXXXXXADDAAAMNSGKSTAVALSHGGR 401
H CMKERV+CGG+F GFMM +NS S+ + GR
Sbjct: 306 IQH-CMKERVKCGGIFGGFMM-----------------------LNSSSSSYLVSGDDGR 341
Query: 402 GR--SWGWAFASPMRAFXXXXXXXXXXRDIIRDANDKNATPNLSAIPSLLAAR 452
G SWGWA ASPMRAF N TPNLSA+PSLL AR
Sbjct: 342 GSRGSWGWALASPMRAFSSKSSSK-------DSKNTSEKTPNLSAVPSLLTAR 387