Miyakogusa Predicted Gene

Lj4g3v2296130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2296130.1 Non Characterized Hit- tr|I1P1Y6|I1P1Y6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,25.41,0.000000000006,mTERF,Mitochodrial transcription termination
factor-related; seg,NULL; Mitochondrial termination
fac,NODE_40986_length_2753_cov_111.773705.path1.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g049780.1 | transcription termination factor family protei...   443   e-125
Medtr5g041630.1 | transcription termination factor family protei...   217   1e-56
Medtr2g067230.1 | transcription termination factor family protei...   203   2e-52
Medtr7g081270.1 | transcription termination factor family protei...   147   2e-35
Medtr2g034600.2 | transcription termination factor family protei...   102   5e-22
Medtr2g034600.1 | transcription termination factor family protei...   102   5e-22
Medtr2g034600.3 | transcription termination factor family protei...   102   7e-22
Medtr4g070060.1 | transcription termination factor family protei...    97   2e-20
Medtr4g084630.1 | transcription termination factor family protei...    95   1e-19
Medtr5g068860.1 | transcription termination factor family protei...    94   2e-19
Medtr6g003960.1 | transcription termination factor family protei...    93   2e-19
Medtr1g115415.1 | transcription termination factor family protei...    88   1e-17
Medtr5g094610.1 | transcription termination factor family protei...    87   2e-17
Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC | s...    62   9e-10
Medtr3g092710.1 | plastid transcriptionally active 15 protein | ...    58   1e-08
Medtr8g105560.1 | transcription termination factor family protei...    55   9e-08
Medtr2g061450.1 | transcription termination factor family protei...    48   1e-05

>Medtr2g049780.1 | transcription termination factor family protein |
           HC | chr2:22364848-22363786 | 20130731
          Length = 313

 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/262 (82%), Positives = 241/262 (91%), Gaps = 1/262 (0%)

Query: 41  QNHPLYTPTTHAKLSLQFKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSK 100
           QNHPLYTPT + KLSLQFKEKILCLEVMG+D+G+ALSQNP+L TAT+ESI SII+FL+SK
Sbjct: 53  QNHPLYTPT-NEKLSLQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIHSIITFLVSK 111

Query: 101 GIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVR 160
           GIQHKDLPRIFGMCPKILTS IKT+LNPVFDFL+HDLKVPD++FRKVI KCPRLLTSSV 
Sbjct: 112 GIQHKDLPRIFGMCPKILTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKCPRLLTSSVV 171

Query: 161 DQLKPALFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLR 220
           DQLKPALFYL RLG +DL  LAYQD VLLVSNVERT+IPKL++LE+LGF+K EAR +VLR
Sbjct: 172 DQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVERTIIPKLKHLESLGFTKEEARCMVLR 231

Query: 221 CPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINL 280
           CPAL TFSIENNF+PKFEYF+ EM  KLEELKEFPQYF+FSLENRIK RHMEVV+ GINL
Sbjct: 232 CPALLTFSIENNFQPKFEYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHMEVVESGINL 291

Query: 281 PLSVMLKSTDEEFRELIKQGDG 302
           PLS+MLKSTD+EFRELIK+G G
Sbjct: 292 PLSLMLKSTDDEFRELIKKGAG 313


>Medtr5g041630.1 | transcription termination factor family protein |
           HC | chr5:18278077-18276642 | 20130731
          Length = 308

 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/250 (44%), Positives = 168/250 (67%)

Query: 49  TTHAKLSLQFKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLP 108
           TT     L F+EK+L LE + V+  +A  QNP+LR+  + +++S+   L S GI    + 
Sbjct: 48  TTTPNRGLIFREKVLYLEKLKVNPEKAFKQNPNLRSCPLRTLKSVEQCLSSIGIHRSQMG 107

Query: 109 RIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALF 168
           RI  M P++LT +  +++ P+ DFLL+++++P ++  K I +CPRLL SSV ++L+PAL 
Sbjct: 108 RILDMLPELLTCEPYSDIYPLLDFLLNEVEIPYHDVHKSILRCPRLLVSSVENRLRPALC 167

Query: 169 YLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFS 228
           +L+ LGF     L  Q ++LLVS+VE TL+PK+E+L  LGF++ E  ++V+R P L TFS
Sbjct: 168 FLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFS 227

Query: 229 IENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKS 288
           ++ N  PKFE+F  EM   + ELK FPQYF+FSLE RIKPRH  +V+ G++L L  ML+ 
Sbjct: 228 VDKNLAPKFEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHAMLVRLGLSLSLQEMLQI 287

Query: 289 TDEEFRELIK 298
           +D +   L++
Sbjct: 288 SDGDLIRLLE 297


>Medtr2g067230.1 | transcription termination factor family protein |
           HC | chr2:28121064-28123893 | 20130731
          Length = 328

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 159/237 (67%), Gaps = 5/237 (2%)

Query: 58  FKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           F++K+L LE +G+D+   +  +P L TA+++ I+S + ++        +  R+ GMCP+I
Sbjct: 69  FQKKVLYLESIGIDSFSLIENHPKLVTASLDDIKSTVKYITGMDFSSIEFRRLVGMCPEI 128

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 177
           LT+ + +++ PVF FL  +++V   N + VIN+ PRL+  +V  QL+P +++L+ +G ++
Sbjct: 129 LTTKV-SDIIPVFTFLHREVRVIGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEE 187

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 237
           +     + + LL  +VE   IP++EY +N+GFS+ +  S+  R P LF +SI+NN EPK+
Sbjct: 188 VN----KHTHLLSCSVEDKFIPRIEYFKNIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKY 243

Query: 238 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFR 294
            YF  EMGR L+E+KEFP YF+FSLENRIKPRH   V+ G+  PL ++LK+++  F+
Sbjct: 244 NYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQ 300


>Medtr7g081270.1 | transcription termination factor family protein |
           HC | chr7:31009132-31008262 | 20130731
          Length = 284

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 127/211 (60%), Gaps = 4/211 (1%)

Query: 86  TMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIK-TELNPVFDFLLHDLKVPDYNF 144
           T+  I +II+FL S      D+PR+    P + T+ I  T L+PVF FL  DL     + 
Sbjct: 70  TINHILTIITFLKSHSFTEADIPRLVHHSPHLFTTSISPTSLSPVFTFLASDLLASVEDS 129

Query: 145 RKVINKCPRLLTSSVRDQLKPALFYLKR-LGFKDLTPLAYQDSVLLVSNVERTLIPKLEY 203
             +I +CP LL + V   LKP L +L+  +G  +L     +++ LL + VE+  + ++ +
Sbjct: 130 HGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRM-RVRF 188

Query: 204 LENL-GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSL 262
           LE + GF+  EAR++  R PA+  + +ENN  PKF Y   EM R++EELK+FPQ+F FSL
Sbjct: 189 LEEVVGFTYEEARNVCARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSL 248

Query: 263 ENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 293
           + RI PRH+ + + G+ +PL+ ML   DE+F
Sbjct: 249 DKRIVPRHLHLKERGVRIPLNRMLMWGDEKF 279


>Medtr2g034600.2 | transcription termination factor family protein |
           HC | chr2:13233091-13236856 | 20130731
          Length = 561

 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)

Query: 59  KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           KEKI+ +          L++ P L   ++ ++++  + F  S G+  +   ++    P +
Sbjct: 326 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 375

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 177
           LT   + ++N   DFL  +  V + N  K++ +CP +++ SV D L+P   Y + LG  D
Sbjct: 376 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 432

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 237
           +  L +        ++E  + P  ++    G++  E   ++ R   L+TFS+  N  PK+
Sbjct: 433 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 492

Query: 238 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 297
           +YF   M     EL +FPQ+F +SLE RIKPR+  V   G+ L L+ +L  +   F E++
Sbjct: 493 DYFL-TMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 551

Query: 298 KQ 299
           ++
Sbjct: 552 RK 553



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 94  ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 153
           I++L+  G+    +  I    P      ++ ++ PV +F L +L VP      ++ K P+
Sbjct: 280 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 338

Query: 154 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 211
           L   S+   LKP + + + LG   +    + Y+   LL  + ++ +   L++L   G S+
Sbjct: 339 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 397

Query: 212 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 270
                ++ RCP + ++S+E+N  P   YF   +G  +  L    PQ F  S+E  IKP  
Sbjct: 398 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 456

Query: 271 MEVVQCGINL-PLSVMLK 287
              ++ G  +  + +M+K
Sbjct: 457 QFFLERGYTMEEIGIMIK 474


>Medtr2g034600.1 | transcription termination factor family protein |
           HC | chr2:13233091-13236843 | 20130731
          Length = 557

 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)

Query: 59  KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           KEKI+ +          L++ P L   ++ ++++  + F  S G+  +   ++    P +
Sbjct: 322 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 371

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 177
           LT   + ++N   DFL  +  V + N  K++ +CP +++ SV D L+P   Y + LG  D
Sbjct: 372 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 428

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 237
           +  L +        ++E  + P  ++    G++  E   ++ R   L+TFS+  N  PK+
Sbjct: 429 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 488

Query: 238 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 297
           +YF   M     EL +FPQ+F +SLE RIKPR+  V   G+ L L+ +L  +   F E++
Sbjct: 489 DYFL-TMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 547

Query: 298 KQ 299
           ++
Sbjct: 548 RK 549



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 94  ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 153
           I++L+  G+    +  I    P      ++ ++ PV +F L +L VP      ++ K P+
Sbjct: 276 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 334

Query: 154 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 211
           L   S+   LKP + + + LG   +    + Y+   LL  + ++ +   L++L   G S+
Sbjct: 335 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 393

Query: 212 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 270
                ++ RCP + ++S+E+N  P   YF   +G  +  L    PQ F  S+E  IKP  
Sbjct: 394 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 452

Query: 271 MEVVQCGINL-PLSVMLK 287
              ++ G  +  + +M+K
Sbjct: 453 QFFLERGYTMEEIGIMIK 470


>Medtr2g034600.3 | transcription termination factor family protein |
           HC | chr2:13233799-13236843 | 20130731
          Length = 496

 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)

Query: 59  KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           KEKI+ +          L++ P L   ++ ++++  + F  S G+  +   ++    P +
Sbjct: 261 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 310

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 177
           LT   + ++N   DFL  +  V + N  K++ +CP +++ SV D L+P   Y + LG  D
Sbjct: 311 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 367

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 237
           +  L +        ++E  + P  ++    G++  E   ++ R   L+TFS+  N  PK+
Sbjct: 368 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 427

Query: 238 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 297
           +YF   M     EL +FPQ+F +SLE RIKPR+  V   G+ L L+ +L  +   F E++
Sbjct: 428 DYFLT-MDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 486

Query: 298 KQ 299
           ++
Sbjct: 487 RK 488



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 94  ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 153
           I++L+  G+    +  I    P      ++ ++ PV +F L +L VP      ++ K P+
Sbjct: 215 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 273

Query: 154 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 211
           L   S+   LKP + + + LG   +    + Y+   LL  + ++ +   L++L   G S+
Sbjct: 274 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 332

Query: 212 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 270
                ++ RCP + ++S+E+N  P   YF   +G  +  L    PQ F  S+E  IKP  
Sbjct: 333 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 391

Query: 271 MEVVQCGINL-PLSVMLK 287
              ++ G  +  + +M+K
Sbjct: 392 QFFLERGYTMEEIGIMIK 409


>Medtr4g070060.1 | transcription termination factor family protein |
           HC | chr4:26370303-26365871 | 20130731
          Length = 617

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 71  DAGRALSQNPDLRTATME-SIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPV 129
           D G+ L+  P L   ++E   + ++ +L   GI    + R+  + P +   D++  + P 
Sbjct: 361 DVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPK 420

Query: 130 FDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPA-LFYLKRLGF--KDLTPLAYQDS 186
             F   DL V +    K++ K P LLT S+  +++P  +F + + G   +++  +     
Sbjct: 421 VKFF-QDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGP 479

Query: 187 VLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 246
            LL  ++   L   ++Y  +LG    +   ++   P L  ++I+    PK+ Y    M R
Sbjct: 480 ELLGCSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNIDV-LRPKYTYLRKTMVR 538

Query: 247 KLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIK 298
            L++  EFP++F++SLE RI PRH  +V+  IN+ L  ML  TDEEF  ++K
Sbjct: 539 TLKDAIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVK 590



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 6/194 (3%)

Query: 57  QFKEKILCLEVMGVD---AGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGM 113
           +  E +  LE  GV     G  +S+ P L + ++E +++ + F L  G+  KD   +   
Sbjct: 273 ELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKTRVQFYLDMGLDAKDFGTMVFD 332

Query: 114 CPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRL 173
            PK L      E+N   D+ L +  +   +  K++   P+L+  S+ +Q KP + YL   
Sbjct: 333 FPKALGHYTLEEMNRKVDY-LKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYY 391

Query: 174 GF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIEN 231
           G     +  +     ++   ++E T++PK+++ ++LG        ++++ P L T+S+  
Sbjct: 392 GITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIAKMLVKFPTLLTYSLYK 451

Query: 232 NFEPKFEYFAGEMG 245
              P   +   + G
Sbjct: 452 KIRPVVIFLMTKAG 465



 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 90  IQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVIN 149
           +  I+ +L   G++ + +  +   CPK+L+  ++ E+     F L D+ +   +F  ++ 
Sbjct: 274 LDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLE-EVKTRVQFYL-DMGLDAKDFGTMVF 331

Query: 150 KCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
             P+ L     +++   + YLK  G   KD+  L      L+  ++E    P ++YL   
Sbjct: 332 DFPKALGHYTLEEMNRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYY 391

Query: 208 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRK----LEELKEFPQYFAFSLE 263
           G ++   R ++   P +F   +E    PK ++F  ++G +     + L +FP    +SL 
Sbjct: 392 GITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQ-DLGVRNDGIAKMLVKFPTLLTYSLY 450

Query: 264 NRIKP 268
            +I+P
Sbjct: 451 KKIRP 455


>Medtr4g084630.1 | transcription termination factor family protein |
           HC | chr4:32962573-32960937 | 20130731
          Length = 332

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 130/250 (52%), Gaps = 10/250 (4%)

Query: 54  LSLQFKEKIL----CLEVMGV---DAGRALSQNPDLRTATME-SIQSIISFLLSKGIQHK 105
           L L   EKI+    CL  +     +   A+++ P + + ++E  +  +++F  + G+  K
Sbjct: 69  LVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEK 128

Query: 106 DLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKP 165
            + +I  + P++++  I+T++  +  FL       +    K++ K P ++  SV  +L+P
Sbjct: 129 HIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKNGMIGKIMVKDPYIMGYSVDKRLRP 188

Query: 166 ALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPA 223
              +LK +G    DL  LA     +L  +V++ L+   ++L+N GF   +   LV+  P 
Sbjct: 189 TSEFLKSIGLTEHDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFQGRQIVDLVVGYPP 248

Query: 224 LFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLS 283
           +   S+ N+ EP+ ++    MGR+++E+ ++P +F   L+ ++  RH  + +  +N  LS
Sbjct: 249 ILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKKRNLNCSLS 308

Query: 284 VMLKSTDEEF 293
            ML   +++F
Sbjct: 309 EMLDCNEKKF 318


>Medtr5g068860.1 | transcription termination factor family protein |
           HC | chr5:29165945-29163659 | 20130731
          Length = 530

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 41/264 (15%)

Query: 71  DAGRALSQNPDLRTATMESIQSI-ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPV 129
           D  R L + P++    +E   S  +++L+  G+  ++L  I    P+IL   +   + P 
Sbjct: 223 DIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPF 282

Query: 130 FDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK------------- 176
            ++L   L +P     ++I   P +L   + +++KP +  L+    +             
Sbjct: 283 VEYL-ESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRETSLASIIAQYPD 341

Query: 177 ----DLTP-LAYQDSVL--------------------LVSNVERTLIPKLEYLENLGFSK 211
               DL P LA + SVL                    +VS     ++  +++L++ GFS 
Sbjct: 342 IIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSSTPMLKHVDFLKDCGFSV 401

Query: 212 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHM 271
            + R +++ CP L   +I +  +  F+YF  EM R LE+L EFP +F + LE+ IKPRH 
Sbjct: 402 DQMRKMIVGCPQLLALNI-DIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHN 460

Query: 272 EVVQCGINLPLSVMLKSTDEEFRE 295
            V + G+   L+ ML  +DE+F +
Sbjct: 461 MVTKKGLKCSLAWMLNCSDEKFEQ 484


>Medtr6g003960.1 | transcription termination factor family protein |
           HC | chr6:35948-29152 | 20130731
          Length = 609

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 4/222 (1%)

Query: 74  RALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFL 133
           RA+ + P L   +   ++ ++      G+Q K L ++    P++L    +  L  V  F 
Sbjct: 368 RAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFF- 426

Query: 134 LHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGF-KDLTPLAYQDS-VLLVS 191
             ++     N  +++ +CP +  +S+   L+  + +L R+   K   PL  +    LLVS
Sbjct: 427 -ENMGFDKENIGRILARCPEIFATSISKTLQSKIEFLSRIEVSKAYIPLVIRKYPELLVS 485

Query: 192 NVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEEL 251
           ++ +TL  ++ Y   +G S+ E   +V +   L  +SI+    PK E+    M R + ++
Sbjct: 486 DINKTLPQRIVYFMKVGLSEKEIALMVRKFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDV 545

Query: 252 KEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 293
             +P+YF++SLE +IKPR+  +    I   L  ML   DEEF
Sbjct: 546 VRYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKNDEEF 587


>Medtr1g115415.1 | transcription termination factor family protein |
           HC | chr1:52109146-52107512 | 20130731
          Length = 501

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 45/298 (15%)

Query: 46  YTPTTHAKLSLQFKEKILCLEVMGV---DAGRALSQNPDLRTATMESIQSI-ISFLLSKG 101
           Y    HA + ++    I  L  + V   D G  L + P+L    +E   S  +++L+S G
Sbjct: 163 YPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIG 222

Query: 102 IQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRD 161
           +  +D+  +    P  L   + T + P+ D+L+ +L +P     +++ K   LL   + +
Sbjct: 223 VNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV-NLGLPKRILARMLEKRAYLLGYDLEE 281

Query: 162 QLKPALFYLKRLGFKD----------------------------------LTPLAYQDSV 187
            +KP +  L   G +                                   + P  +   V
Sbjct: 282 TVKPNVDCLISFGLRKEYLPSVIAQYPLIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVV 341

Query: 188 ----LLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGE 243
                +VS  +  ++  +E+L        +  S+V++CP L    +E   +  + +F  E
Sbjct: 342 EKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVEL-MKNSYYFFKSE 400

Query: 244 MGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIKQGD 301
           MGR ++EL EFP+YF +SLE+RIKPR+  +   GI   L+ ML  +D+ F E + QG+
Sbjct: 401 MGRPVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWMLNCSDQRFEERL-QGN 457



 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 93  IISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLH-DLKVPDYNFRKVINKC 151
           ++ +L   GI    L       P++L + +  EL PV  FL   D++  D  F  V+ K 
Sbjct: 142 VLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGF--VLQKY 199

Query: 152 PRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGF 209
           P LL   +   +  ++ YL  +G   +D+ P+  Q    L   V   + P ++YL NLG 
Sbjct: 200 PELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGL 259

Query: 210 SKGEARSLVLRCPALFTFSIENNFEPKFE 238
            K     ++ +   L  + +E   +P  +
Sbjct: 260 PKRILARMLEKRAYLLGYDLEETVKPNVD 288


>Medtr5g094610.1 | transcription termination factor family protein |
           HC | chr5:41344877-41348219 | 20130731
          Length = 503

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 111/219 (50%), Gaps = 7/219 (3%)

Query: 59  KEKILCLEVMGV---DAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHKDLPRIFGMC 114
           +E+I  L  +GV   D  R L + P +   T+E+ +++ ++FL+  G+    + +I    
Sbjct: 227 QERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIAST 286

Query: 115 PKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKR-- 172
           P + +  ++  L P   +L+ ++ + + +  KVI   P++L   +       L +L +  
Sbjct: 287 PSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKEL 346

Query: 173 -LGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIEN 231
               + +  +  +   LL  +++  L+P++ +L ++G    +   ++     + + S+E 
Sbjct: 347 DAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEA 406

Query: 232 NFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRH 270
           N +PK+ Y   E+  +++ L ++P Y + SL+ RI+PRH
Sbjct: 407 NLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRH 445


>Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC |
           scaffold0320:12511-20285 | 20130731
          Length = 225

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 58  FKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           F++K+L LE +G+D+   +  +P L TA+++ I+S + ++        +  R+ GMCP+I
Sbjct: 48  FQKKVLYLESIGIDSFSLIENHPKLVTASLDDIKSTVKYITGMDFSTIEFRRLVGMCPEI 107

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKV 147
           LT+ + +++ PVF FL  +++V   N + V
Sbjct: 108 LTTKV-SDIIPVFTFLHREVRVNGSNIKHV 136


>Medtr3g092710.1 | plastid transcriptionally active 15 protein | HC
           | chr3:42360298-42362077 | 20130731
          Length = 506

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 73  GRALSQNPDLRTATMESIQSIISFLLS-KGIQHKDLPRIFGMCPKILTSDIKTELNPVFD 131
           G+ L++ P +   ++E ++  I FL     +  + + +I  + P I TS  + +L P   
Sbjct: 271 GKVLNRFPIILNYSVEHLEEHIKFLRCFADLDDQQIFKIVLVFPAIFTSSRERKLRPRIQ 330

Query: 132 FLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLVS 191
           FL       D  F K++ K    L+ S R  L   L  L ++G+K      Y+   L V+
Sbjct: 331 FLKECGLDADEIF-KLLTKAALFLSISFRSNLAYKLGVLVKIGYK------YRTKELAVA 383

Query: 192 NVERTLIP------KLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMG 245
               T I        +    N GFS  +  ++  + P +  +    + E K +Y   EM 
Sbjct: 384 IAASTRISCENMQKMVSLFLNYGFSLEDIFAMSKKHPQILQYH-HASLEKKMDYMIEEMN 442

Query: 246 RKLEELKEFPQYFAFSLENRIKPRH 270
           R ++EL +FP Y  + L++RIK R+
Sbjct: 443 RDIQELLDFPAYLGYKLDDRIKHRY 467


>Medtr8g105560.1 | transcription termination factor family protein |
           HC | chr8:44520352-44517998 | 20130731
          Length = 560

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 68/267 (25%)

Query: 88  ESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKV 147
           E+++  +  L+S G++ + LP +    P+I+   +  +L+    F    LK+    F KV
Sbjct: 228 ETMKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLTAKLSLQQYFYSLKLKIDSEGFAKV 287

Query: 148 INKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
           + K P++++      +KP  F L R        +  QD   +V    + +  ++E ++N 
Sbjct: 288 VEKMPQVVSLHQNVIMKPVEFLLGR-------AIPLQDVASMVIKCPQLIALRVELMKNN 340

Query: 208 GF--------------SKGEARSL--VLRCPA-LFTFSIENNF----------------- 233
            +              SKG   SL  +L C    F   ++ N+                 
Sbjct: 341 YYFFKREMGRPVKELKSKGRKCSLNWMLNCSGQRFEERLQGNYIKTESICPSFCIGGKLK 400

Query: 234 -------------------------EPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKP 268
                                    +  + +F  E+GR ++EL EFP+YF +SLE+RIK 
Sbjct: 401 LPGNDIVLNEEEESDDEMLYRRTLMKNSYYFFKSEIGRPVKELVEFPEYFTYSLESRIKT 460

Query: 269 RHMEVVQCGINLPLSVMLKSTDEEFRE 295
           + +     G+   L+ ML  +D+ F E
Sbjct: 461 KGLR--SKGMKCSLNWMLSCSDQRFEE 485


>Medtr2g061450.1 | transcription termination factor family protein |
           HC | chr2:26047796-26046155 | 20130731
          Length = 432

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 91/200 (45%), Gaps = 11/200 (5%)

Query: 74  RALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFL 133
           R L + P         I  +I+FL+   +   ++ R+  + PK+L   I+  L P    L
Sbjct: 153 RVLEEFPSAVVMGETQIVGVINFLMEFRVPKDEIDRVVRLFPKVLGFSIEDRLKP----L 208

Query: 134 LHDLKVPDYNFRKV---INKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLV 190
           +H+L+   ++ R+V   + + PR+L   +  +    L  L+ L  ++          L+ 
Sbjct: 209 IHELRGLGFSSREVRAEVVRDPRILGMEI-GEFSRCLKLLQSLKCREAIKERIFGEGLVR 267

Query: 191 SNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEE 250
           +  E  L  +++ L   G  + +A  ++ + P L  + +E + E K E+    M   ++ 
Sbjct: 268 ACFEVKL--RVDCLCGRGLIRRDALKVLWKEPRLIAYDLE-DIEKKIEFLIQRMKYGVDC 324

Query: 251 LKEFPQYFAFSLENRIKPRH 270
           L E P+Y   + E +I PR+
Sbjct: 325 LHEVPEYLGVNFEKQIVPRY 344