Miyakogusa Predicted Gene
- Lj4g3v2290290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2290290.1 Non Characterized Hit- tr|I3T5W5|I3T5W5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,69.86,4e-17,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.50710.1
(294 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g120340.1 | plastid developmental protein DAG | HC | chr4:... 325 4e-89
Medtr2g078090.1 | plastid developmental protein DAG | HC | chr2:... 190 1e-48
Medtr1g009840.1 | plastid developmental protein DAG | HC | chr1:... 167 1e-41
Medtr1g041745.1 | plastid developmental protein DAG | HC | chr1:... 156 3e-38
Medtr2g011000.1 | plastid developmental protein DAG | HC | chr2:... 152 5e-37
Medtr1g041745.2 | plastid developmental protein DAG | HC | chr1:... 141 7e-34
Medtr1g075460.1 | plastid developmental protein DAG | HC | chr1:... 140 2e-33
Medtr1g075460.2 | plastid developmental protein DAG | HC | chr1:... 140 2e-33
Medtr2g006210.1 | plastid developmental protein DAG, putative | ... 132 3e-31
Medtr6g043040.1 | plastid developmental protein DAG | LC | chr6:... 88 9e-18
Medtr2g006240.1 | plastid developmental protein DAG, putative | ... 85 7e-17
Medtr2g078100.1 | cobalt ion-binding protein, putative | HC | ch... 69 6e-12
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
>Medtr4g120340.1 | plastid developmental protein DAG | HC |
chr4:49892396-49894453 | 20130731
Length = 263
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 185/267 (69%), Gaps = 46/267 (17%)
Query: 30 RCRCIFAL--AAKQTLPVPDTVKFSVRTKSSGSGYSPLNDPSPNWSNRPPKETILLDGCD 87
R R FAL A++QTLP+P + F VR KSSGSGYSPLNDPSPNWSNRPPKETILLDGCD
Sbjct: 31 RTRFAFALSSASRQTLPIPHS--FPVRFKSSGSGYSPLNDPSPNWSNRPPKETILLDGCD 88
Query: 88 YEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISE 147
YEHWLI+MEFP+NPKPSE EMVN+YVKTL Q++GSEEEA KKIYSVST TY GFGAL+SE
Sbjct: 89 YEHWLIIMEFPDNPKPSEDEMVNSYVKTLAQVLGSEEEAKKKIYSVSTSTYIGFGALVSE 148
Query: 148 ELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRYAERQXXXXXXXXXX 207
ELSYK+KELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRYAER
Sbjct: 149 ELSYKIKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRYAERAPSRNRPRPRH 208
Query: 208 XXXXXXMQVERTDPXXXXXXXXXXXXPMDQSAPMNSQRQNWNQGQGGPMDQSGPMXXXXX 267
MQVER DP +QRQNWNQ QG
Sbjct: 209 DRRRETMQVERRDP---------------------NQRQNWNQVQG-------------- 233
Query: 268 XXXXXXXXPMDQSGPMNSQNSASDGEN 294
M S PMNSQNSAS GE+
Sbjct: 234 -------EHMQPSNPMNSQNSASGGES 253
>Medtr2g078090.1 | plastid developmental protein DAG | HC |
chr2:32418788-32422274 | 20130731
Length = 375
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 117/159 (73%), Gaps = 7/159 (4%)
Query: 30 RCRCIFALA-AKQTLPVPDTVKFSVRTKSSGSGYSPLNDPSPNWSNRPPKETILLDGCDY 88
R R + A A + + +P FS R +S LNDP+PNWSNRPPKETILLDGCD+
Sbjct: 41 RLRPLSATAITSRHILLPSFRAFSTRPTTSS-----LNDPNPNWSNRPPKETILLDGCDF 95
Query: 89 EHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEE 148
EHWL+VME PE P+ E++++Y+KTL +++GSEEEA K IYSVST Y FGAL SEE
Sbjct: 96 EHWLVVMEKPEG-DPTRDEIIDSYIKTLAEVIGSEEEARKSIYSVSTRHYFAFGALCSEE 154
Query: 149 LSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIP 187
LSYK+KELP V WVLPDSYL+V KDYGG+ F++G+ +P
Sbjct: 155 LSYKLKELPKVRWVLPDSYLNVREKDYGGEPFINGQAVP 193
>Medtr1g009840.1 | plastid developmental protein DAG | HC |
chr1:1542198-1544398 | 20130731
Length = 327
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 52 SVRTKSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPENPKPSEQEMVNA 111
S R S+ S LND +PNWSN PKETILLDGCD+EHWL++ME P+ + E+++
Sbjct: 51 SFRALSTRPTTSSLNDQNPNWSNPSPKETILLDGCDFEHWLVIMETPDG-DATRDEIIDG 109
Query: 112 YVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVP 171
Y+KT +++G+EE A K IYSVST Y FGA+ SEELSYK+ ELP V WVLPDSYL+V
Sbjct: 110 YIKTFAEVIGNEELARKNIYSVSTRHYFAFGAVCSEELSYKLNELPKVRWVLPDSYLNVK 169
Query: 172 NKDYGGDLFVDGKVIP 187
KDYGG+ F++G+ +P
Sbjct: 170 EKDYGGEPFINGQAVP 185
>Medtr1g041745.1 | plastid developmental protein DAG | HC |
chr1:15695728-15692169 | 20130731
Length = 217
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 102/142 (71%), Gaps = 2/142 (1%)
Query: 48 TVKFSVRTKSSGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPENPKPSEQ 106
TV+ V ++ S YSPLN + N+S RPP + L GCDYEHWLIVM+ P S+Q
Sbjct: 42 TVQCRV-NRAGNSTYSPLNSGNSNFSERPPTDMAPLFPGCDYEHWLIVMDKPGGEGASKQ 100
Query: 107 EMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYKVKELPGVLWVLPDS 166
+M++ YV+TL +++GSEEEA KKIY+VS Y GFG I EE S K++ LPGVL+VLPDS
Sbjct: 101 QMIDCYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDS 160
Query: 167 YLDVPNKDYGGDLFVDGKVIPR 188
Y+D NKDYG +LFV+G+++ R
Sbjct: 161 YVDPENKDYGAELFVNGEIVQR 182
>Medtr2g011000.1 | plastid developmental protein DAG | HC |
chr2:2614958-2612197 | 20130731
Length = 221
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 85/110 (77%)
Query: 78 KETILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHT 137
+ETI+L GCDY HWLIVMEFP++P PS +M++ Y++TL ++GS EEA K +Y+ ST T
Sbjct: 65 RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMYAFSTTT 124
Query: 138 YTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIP 187
YTGF + E S K K LPGVLWVLPDSY+DV N DYGGD +++G++IP
Sbjct: 125 YTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNMDYGGDKYINGEIIP 174
>Medtr1g041745.2 | plastid developmental protein DAG | HC |
chr1:15695728-15692740 | 20130731
Length = 178
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Query: 56 KSSGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVK 114
++ S YSPLN + N+S RPP + L GCDYEHWLIVM+ P S+Q+M++ YV+
Sbjct: 49 RAGNSTYSPLNSGNSNFSERPPTDMAPLFPGCDYEHWLIVMDKPGGEGASKQQMIDCYVQ 108
Query: 115 TLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKD 174
TL +++GSEEEA KKIY+VS Y GFG I EE S K++ LPGVL+VLPDSY+D NKD
Sbjct: 109 TLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENKD 168
Query: 175 YGGDLFV 181
YG L V
Sbjct: 169 YGESLDV 175
>Medtr1g075460.1 | plastid developmental protein DAG | HC |
chr1:33421296-33424686 | 20130731
Length = 235
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 35 FALAAKQTLPVPDTVKFSVRTKSSGSGYSPLNDPS-PNWSNRPPKETI-LLDGCDYEHWL 92
F + QT + ++ F ++ YSPL S ++S+RPP E L GCDY HWL
Sbjct: 47 FIIPMSQT--IFQSLHFGGIHRAGYCNYSPLVPGSNTSFSDRPPAEMAPLFPGCDYNHWL 104
Query: 93 IVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYK 152
I+++ P ++Q+M++ YVKTL Q++GSEEEA KKIY+VS Y GFG + EE S K
Sbjct: 105 IIIDKPGGEGATKQQMIDCYVKTLAQVLGSEEEAKKKIYNVSCERYFGFGCELDEETSNK 164
Query: 153 VKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPR 188
++ +PGVL+VLPDSY+D ++DYG +LFV+G+++ R
Sbjct: 165 LEGIPGVLFVLPDSYVDPEHQDYGAELFVNGEIVQR 200
>Medtr1g075460.2 | plastid developmental protein DAG | HC |
chr1:33421296-33424686 | 20130731
Length = 235
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 35 FALAAKQTLPVPDTVKFSVRTKSSGSGYSPLNDPS-PNWSNRPPKETI-LLDGCDYEHWL 92
F + QT + ++ F ++ YSPL S ++S+RPP E L GCDY HWL
Sbjct: 47 FIIPMSQT--IFQSLHFGGIHRAGYCNYSPLVPGSNTSFSDRPPAEMAPLFPGCDYNHWL 104
Query: 93 IVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYK 152
I+++ P ++Q+M++ YVKTL Q++GSEEEA KKIY+VS Y GFG + EE S K
Sbjct: 105 IIIDKPGGEGATKQQMIDCYVKTLAQVLGSEEEAKKKIYNVSCERYFGFGCELDEETSNK 164
Query: 153 VKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPR 188
++ +PGVL+VLPDSY+D ++DYG +LFV+G+++ R
Sbjct: 165 LEGIPGVLFVLPDSYVDPEHQDYGAELFVNGEIVQR 200
>Medtr2g006210.1 | plastid developmental protein DAG, putative | HC
| chr2:499629-496731 | 20130731
Length = 489
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 79 ETILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVG-SEEEAMKKIYSVSTHT 137
+TIL +GCDY HWL V +FP + KP +EM+ Y +T + + S EEA KKIY+ ST T
Sbjct: 115 DTILFEGCDYNHWLFVCDFPRDNKPPPEEMIRIYEETCAKGLNISVEEAKKKIYACSTTT 174
Query: 138 YTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRP 189
YTGF A+++EE S K + +PGV++VLPDSY+D NK YGGD +++G++IPRP
Sbjct: 175 YTGFQAVMTEEESKKFEGIPGVIFVLPDSYIDPVNKQYGGDQYIEGQIIPRP 226
>Medtr6g043040.1 | plastid developmental protein DAG | LC |
chr6:14846758-14845642 | 20130731
Length = 173
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 36 ALAAKQTLPVPDTVKFSVRTKSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVM 95
+L + +P+ T++ S+ T + G S + S+ G DY+HW+I M
Sbjct: 32 SLTLLRFVPMSQTIRQSLNTAARFGGIHSRAYYSSSLSD---------GGLDYKHWVIAM 82
Query: 96 EFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTY-TGFGALISEELSYKVK 154
+ P S QE ++ Y++TL ++GS EA KKIYSV GFG I E+ +
Sbjct: 83 DNPGGKDSSWQEKIDCYIQTLGHVLGSVVEAKKKIYSVYCFKKEFGFGCEIDEQTKNNLG 142
Query: 155 ELPGVLWVLPDSYLDVPNKDYGGDLFV 181
+PGV+++LPD Y+D+ K YGG+ FV
Sbjct: 143 VMPGVMFILPDVYMDIQKKYYGGEDFV 169
>Medtr2g006240.1 | plastid developmental protein DAG, putative | LC
| chr2:510183-509161 | 20130731
Length = 188
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 84 DGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSE-EEAMKKIYSVSTHTYTGFG 142
+GCDY HW IV +FP++ KP+ +EM+ Y +T + + EEA KKIY+ T TY GF
Sbjct: 85 EGCDYNHWFIVFDFPKDNKPTPEEMIRLYEETCAKGLNIRVEEAKKKIYACKTTTYPGFQ 144
Query: 143 ALISEELSYKVKELPGVLWVLPDSYLDVPNK 173
A+++EE S K + +PGV+ VLPD + NK
Sbjct: 145 AVMTEEESKKFEGMPGVIHVLPDYNTALVNK 175
>Medtr2g078100.1 | cobalt ion-binding protein, putative | HC |
chr2:32424149-32424502 | 20130731
Length = 117
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 66 NDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVG 121
ND +PN NRPPK T++L+GC++EHWL+VM P+ PS E+++ Y+KT +++G
Sbjct: 62 NDQNPNCYNRPPKHTVVLNGCNFEHWLVVMWKPDG-DPSRDEIIDGYIKTFVEVIG 116
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%)
Query: 69 SPNWSNRPPKETILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMK 128
+ N ++ P + +L + +HW++ M+ P ++ ++V+ Y + LT+I+G+E++A
Sbjct: 60 TSNQTSIPQTDMLLFPNGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNEKDAQM 119
Query: 129 KIYSVSTHTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGG 177
IY VS T GF + E+ ++++ +PGVL V PD + NKDY G
Sbjct: 120 CIYHVSWKTNFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEG 168