Miyakogusa Predicted Gene
- Lj4g3v2289240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2289240.1 Non Characterized Hit- tr|I1MRL9|I1MRL9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58056
PE,87.96,0,UNCHARACTERIZED,NULL; Pumilio-like repeats,Pumilio
RNA-binding repeat; no description,Armadillo-like,CUFF.50701.1
(548 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g120470.1 | pumilio-like protein | HC | chr4:49940997-4993... 966 0.0
Medtr4g120460.1 | transmembrane protein, putative | LC | chr4:49... 99 1e-20
Medtr1g094630.1 | pumilio-family RNA-binding repeatprotein | HC ... 60 7e-09
Medtr2g036900.2 | pumilio-family RNA-binding repeatprotein | HC ... 57 4e-08
Medtr2g036900.1 | pumilio-family RNA-binding repeatprotein | HC ... 57 4e-08
Medtr2g036900.3 | pumilio-family RNA-binding repeatprotein | HC ... 57 4e-08
Medtr1g094630.3 | pumilio-family RNA-binding repeatprotein | HC ... 56 8e-08
Medtr4g064670.2 | pumilio Mpt5 protein, putative | HC | chr4:241... 55 1e-07
Medtr4g064670.1 | pumilio Mpt5 protein, putative | HC | chr4:241... 55 2e-07
Medtr2g097670.2 | pumilio Mpt5 protein, putative | HC | chr2:417... 55 2e-07
Medtr2g097670.1 | pumilio Mpt5 protein, putative | HC | chr2:417... 55 2e-07
Medtr2g097670.3 | pumilio Mpt5 protein, putative | HC | chr2:417... 54 3e-07
>Medtr4g120470.1 | pumilio-like protein | HC |
chr4:49940997-49933657 | 20130731
Length = 639
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/548 (85%), Positives = 509/548 (92%)
Query: 1 MRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQP 60
MRRHEIAKEDR+KLVTEAL KMKGKI EIAGSH++SRVLQTCVKHCSQAERD VFEEL+P
Sbjct: 92 MRRHEIAKEDRSKLVTEALTKMKGKIHEIAGSHITSRVLQTCVKHCSQAERDQVFEELRP 151
Query: 61 HFLNLAYNAYSVHLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANA 120
HFLNLAY+AY+VHLVKKMLDNASKKQLAGFIS+LRGHVAPLLRHMVGSVVVEHAY+LA+A
Sbjct: 152 HFLNLAYSAYAVHLVKKMLDNASKKQLAGFISTLRGHVAPLLRHMVGSVVVEHAYDLASA 211
Query: 121 AQKQQLLSELYSTELQLFKDLVSSKESRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIV 180
AQKQ+LL ELYSTELQLFKDLV +KE+RLLD+MSKL LQKGSV RHM+ VIQPILEKGIV
Sbjct: 212 AQKQELLLELYSTELQLFKDLVPAKETRLLDVMSKLGLQKGSVSRHMSKVIQPILEKGIV 271
Query: 181 DHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKK 240
DHSILHR+LLEYF+IA KTSVAEIIQQLSSPLL+RMIGTKDGAKIG+LCVKYG+AKERKK
Sbjct: 272 DHSILHRVLLEYFSIADKTSVAEIIQQLSSPLLIRMIGTKDGAKIGILCVKYGNAKERKK 331
Query: 241 IIKGLKEHIGKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPL 300
IIKGLK HIGKTAYHQYGCMVLV ILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPL
Sbjct: 332 IIKGLKGHIGKTAYHQYGCMVLVSILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPL 391
Query: 301 LQLLHPNCSRYFSPEDLASLNSSIPSLSLKDXXXXXXXXXXXKASLDDNESNEDKEVTVD 360
LQLLHPNCSRYFSP++LAS+NSSIPSLSLKD K S+ +++S ED EV V
Sbjct: 392 LQLLHPNCSRYFSPDELASMNSSIPSLSLKDQSEASSQTETSKVSIGNDDSMEDSEVKVP 451
Query: 361 EVNKDKTSVDDSDLAESGKKDPLVRRQELLINSGLAESLLDVCTESVGELIRSNFGKEVL 420
EVN+DKTSVDD+DLAESGKKDPLVRRQELLINSG AESLLD+C E+VGELIRSNFGKEV+
Sbjct: 452 EVNEDKTSVDDTDLAESGKKDPLVRRQELLINSGFAESLLDICIENVGELIRSNFGKEVI 511
Query: 421 YEVATGGSGGILHPTLDDKINSLHKAIASLAALPKSEDSEEEHVLENFHSNRTIRKLILD 480
YEVATGGS GILHPTLDDKINSLHKAIASLAA+PKSEDS+EEHVLENF SNRTIRKLILD
Sbjct: 512 YEVATGGSEGILHPTLDDKINSLHKAIASLAAVPKSEDSQEEHVLENFFSNRTIRKLILD 571
Query: 481 CPSFASTLWEEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLIDNGILKNL 540
CP FAS LW+EALKGKCE WAHGHSCKVI+AFLES DS+VQKLAKKELQPLIDNG+LKN
Sbjct: 572 CPDFASILWKEALKGKCELWAHGHSCKVITAFLESTDSKVQKLAKKELQPLIDNGVLKNP 631
Query: 541 KPTEQATQ 548
+ EQA+Q
Sbjct: 632 QAKEQASQ 639
>Medtr4g120460.1 | transmembrane protein, putative | LC |
chr4:49932167-49929773 | 20130731
Length = 170
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 66/109 (60%), Gaps = 29/109 (26%)
Query: 423 VATGGSGGILHPTLDDKINSLHKAIASLAALPKSEDSEEEHVLENFHSN-RTIRKLILDC 481
V+TG SGGILHP LDDKINSLHKAIASLAA+ KSEDS+EEHVLENF S R +L
Sbjct: 90 VSTGRSGGILHPFLDDKINSLHKAIASLAAVLKSEDSQEEHVLENFFSRCREPISYVL-- 147
Query: 482 PSFASTLWEEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQP 530
SAFLES DS+VQ LA+KELQP
Sbjct: 148 --------------------------FFSAFLESSDSKVQNLAEKELQP 170
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 40 QTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKMLDNAS 83
Q C KHCSQAERD VFEEL+PHFLNLAYNAY+VHLVKK +DNA+
Sbjct: 16 QICAKHCSQAERDEVFEELRPHFLNLAYNAYAVHLVKKTVDNAN 59
>Medtr1g094630.1 | pumilio-family RNA-binding repeatprotein | HC |
chr1:42524277-42532024 | 20130731
Length = 973
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 122/283 (43%), Gaps = 36/283 (12%)
Query: 28 EIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKMLDNASKKQL 87
+ + SR +Q ++ S E+ +F E+ PH L + + ++++K ++ + Q
Sbjct: 649 QFSTDQYGSRFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQR 708
Query: 88 AGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLFKD------- 140
+ L GHV PL M G V++ A E+ + Q+ Q++SEL ++ +D
Sbjct: 709 KELANQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQSQMVSELSGAIMKCVRDQNGNHVI 768
Query: 141 ---LVSSKESRLLDIMSKLDLQKGSVLRHMAS--VIQPILE-------KGIVDHSILHRL 188
+ S ++R+ I++ Q ++ H VIQ +LE + I+ I+ +
Sbjct: 769 QKCIESVPQNRIQFIITSFYGQVVALSTHPYGCRVIQRVLEHCDDLKTQEIIMEEIMQSV 828
Query: 189 -----------LLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKE 237
++++ GK + I+ + +V+M K + + C+ +GS +E
Sbjct: 829 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEE 888
Query: 238 RKKIIKGL------KEHIGKTAYHQYGCMVLVCILSVVDDTKL 274
R+ ++ + E + +G V+ +L DD L
Sbjct: 889 RQILVNEMLGTSDENEPLQAMMKDPFGNYVVQKVLETCDDQSL 931
>Medtr2g036900.2 | pumilio-family RNA-binding repeatprotein | HC |
chr2:16007791-15999134 | 20130731
Length = 984
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L + G I E + SR +Q ++ C E+ VF+E+ PH L + + ++++K
Sbjct: 654 LSDIIGHIVEFSSDQHGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKF 713
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
+ + +Q L G + PL M G V++ A E+ QK QL+ EL ++
Sbjct: 714 FEYGNPEQRKELAEKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCV 773
Query: 139 KD----------LVSSKESRLLDIMSKLDLQKGSVLRHMAS--VIQPILEKGIVDHSILH 186
+D + S +++ I+S Q ++ H VIQ ILE +
Sbjct: 774 RDQNGNHVIQKCIESIPTNKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDE----- 828
Query: 187 RLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKKIIKGLK 246
+ + V EI++ + S + + G + ++ G +ER +II L
Sbjct: 829 --------VQCQFIVDEILESVCS-----LAQDQYGNYVTQHVLERGRPQERSQIISKLS 875
Query: 247 EHIGKTAYHQYGCMVLVCILSVVDDTK---LITKVIIRELQS 285
H+ + + H++ V+ L D ++ LI ++I + Q+
Sbjct: 876 GHVVQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQN 917
>Medtr2g036900.1 | pumilio-family RNA-binding repeatprotein | HC |
chr2:16007791-15999134 | 20130731
Length = 984
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L + G I E + SR +Q ++ C E+ VF+E+ PH L + + ++++K
Sbjct: 654 LSDIIGHIVEFSSDQHGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKF 713
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
+ + +Q L G + PL M G V++ A E+ QK QL+ EL ++
Sbjct: 714 FEYGNPEQRKELAEKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCV 773
Query: 139 KD----------LVSSKESRLLDIMSKLDLQKGSVLRHMAS--VIQPILEKGIVDHSILH 186
+D + S +++ I+S Q ++ H VIQ ILE +
Sbjct: 774 RDQNGNHVIQKCIESIPTNKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDE----- 828
Query: 187 RLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKKIIKGLK 246
+ + V EI++ + S + + G + ++ G +ER +II L
Sbjct: 829 --------VQCQFIVDEILESVCS-----LAQDQYGNYVTQHVLERGRPQERSQIISKLS 875
Query: 247 EHIGKTAYHQYGCMVLVCILSVVDDTK---LITKVIIRELQS 285
H+ + + H++ V+ L D ++ LI ++I + Q+
Sbjct: 876 GHVVQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQN 917
>Medtr2g036900.3 | pumilio-family RNA-binding repeatprotein | HC |
chr2:16007791-16000131 | 20130731
Length = 926
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L + G I E + SR +Q ++ C E+ VF+E+ PH L + + ++++K
Sbjct: 654 LSDIIGHIVEFSSDQHGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKF 713
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
+ + +Q L G + PL M G V++ A E+ QK QL+ EL ++
Sbjct: 714 FEYGNPEQRKELAEKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCV 773
Query: 139 KD----------LVSSKESRLLDIMSKLDLQKGSVLRHMAS--VIQPILEKGIVDHSILH 186
+D + S +++ I+S Q ++ H VIQ ILE +
Sbjct: 774 RDQNGNHVIQKCIESIPTNKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDE----- 828
Query: 187 RLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKKIIKGLK 246
+ + V EI++ + S + + G + ++ G +ER +II L
Sbjct: 829 --------VQCQFIVDEILESVCS-----LAQDQYGNYVTQHVLERGRPQERSQIISKLS 875
Query: 247 EHIGKTAYHQYGCMVLVCILSVVDDTK---LITKVIIRELQS 285
H+ + + H++ V+ L D ++ LI ++I + Q+
Sbjct: 876 GHVVQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQN 917
>Medtr1g094630.3 | pumilio-family RNA-binding repeatprotein | HC |
chr1:42524306-42529214 | 20130731
Length = 846
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 28 EIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKMLDNASKKQL 87
+ + SR +Q ++ S E+ +F E+ PH L + + ++++K ++ + Q
Sbjct: 649 QFSTDQYGSRFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQR 708
Query: 88 AGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLFKD 140
+ L GHV PL M G V++ A E+ + Q+ Q++SEL ++ +D
Sbjct: 709 KELANQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQSQMVSELSGAIMKCVRD 761
>Medtr4g064670.2 | pumilio Mpt5 protein, putative | HC |
chr4:24134583-24140955 | 20130731
Length = 954
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 8 KEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAY 67
K ++AK L ++ G + E + SR +Q ++ + E++ V++E+ PH L L
Sbjct: 608 KSNKAKCFE--LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMT 665
Query: 68 NAYSVHLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLL 127
+ + ++V+K ++ Q + L GHV L M G V++ A E+ + QK +++
Sbjct: 666 DVFGNYVVQKFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMV 725
Query: 128 SELYSTELQLFKD 140
EL ++ +D
Sbjct: 726 KELDGNIMRCVRD 738
>Medtr4g064670.1 | pumilio Mpt5 protein, putative | HC |
chr4:24134583-24140955 | 20130731
Length = 1025
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 8 KEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAY 67
K ++AK L ++ G + E + SR +Q ++ + E++ V++E+ PH L L
Sbjct: 679 KSNKAKCFE--LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMT 736
Query: 68 NAYSVHLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLL 127
+ + ++V+K ++ Q + L GHV L M G V++ A E+ + QK +++
Sbjct: 737 DVFGNYVVQKFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMV 796
Query: 128 SELYSTELQLFKD 140
EL ++ +D
Sbjct: 797 KELDGNIMRCVRD 809
>Medtr2g097670.2 | pumilio Mpt5 protein, putative | HC |
chr2:41717566-41723738 | 20130731
Length = 1047
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L ++ G + E + SR +Q ++ + E++ V++E+ PH L L + + ++V+K
Sbjct: 710 LSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEITPHALALMTDVFGNYVVQKF 769
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
++ Q + L GHV L M G V++ A E+ + QK +++ EL ++
Sbjct: 770 FEHGLASQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCV 829
Query: 139 KD 140
+D
Sbjct: 830 RD 831
>Medtr2g097670.1 | pumilio Mpt5 protein, putative | HC |
chr2:41717566-41723738 | 20130731
Length = 1047
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L ++ G + E + SR +Q ++ + E++ V++E+ PH L L + + ++V+K
Sbjct: 710 LSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEITPHALALMTDVFGNYVVQKF 769
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
++ Q + L GHV L M G V++ A E+ + QK +++ EL ++
Sbjct: 770 FEHGLASQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCV 829
Query: 139 KD 140
+D
Sbjct: 830 RD 831
>Medtr2g097670.3 | pumilio Mpt5 protein, putative | HC |
chr2:41717566-41723738 | 20130731
Length = 917
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L ++ G + E + SR +Q ++ + E++ V++E+ PH L L + + ++V+K
Sbjct: 710 LSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEITPHALALMTDVFGNYVVQKF 769
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
++ Q + L GHV L M G V++ A E+ + QK +++ EL ++
Sbjct: 770 FEHGLASQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCV 829
Query: 139 KD 140
+D
Sbjct: 830 RD 831