Miyakogusa Predicted Gene

Lj4g3v2267660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2267660.1 CUFF.50667.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g034520.1 | DNA-directed RNA polymerase subunit | HC | chr...   187   2e-48

>Medtr2g034520.1 | DNA-directed RNA polymerase subunit | HC |
           chr2:13190291-13187284 | 20130731
          Length = 114

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 94/114 (82%)

Query: 1   MSSMKFCRRCNNILYPKEDTEQKVLYYACRHCNHQEIADDNIVYRNQIRQSVGRNPQAEQ 60
           MS+MKFCR CNNILYPKED EQK+L YACR+C+HQE AD+  VYRN+I  SV    Q  Q
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60

Query: 61  NVAADPTLPRTKSVRCSQCNHGEAVFFQTTTRGEEGTTLVFVCCNPTCGHRWRD 114
           +VAADPTLPRTK+VRC QCNHGEAVFFQ T RGEEG TL FVCCNP CGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114