Miyakogusa Predicted Gene

Lj4g3v2267630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2267630.1 Non Characterized Hit- tr|C6T222|C6T222_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,67.65,0.0006,seg,NULL,CUFF.50666.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g121930.1 | hypothetical protein | HC | chr4:50343181-5034...   100   3e-22

>Medtr4g121930.1 | hypothetical protein | HC |
          chr4:50343181-50340762 | 20130731
          Length = 170

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 60/87 (68%), Gaps = 9/87 (10%)

Query: 1  MADLQQKLDALKGLVGVLNSMDDA-GETQNAXXXXXXXXXXXXXXGRNRF-SGKYNNMAT 58
          MADLQQKLDALKGLVGVLNSMDD   ETQN               GRNR    KYNN   
Sbjct: 1  MADLQQKLDALKGLVGVLNSMDDGESETQNGSPSTPLP-------GRNRSNKAKYNNTGK 53

Query: 59 QTIKGLSNQTGFTEGNANGAINFGNLH 85
          Q IKGLSNQTGFTEGNANGAINFG+L 
Sbjct: 54 QNIKGLSNQTGFTEGNANGAINFGDLR 80



 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 53  YNNMATQTIKGLSNQTGFTEGNANGAINFGNLHA 86
           Y+N   Q IKGL+NQTG+ +GNANG INFG L +
Sbjct: 132 YSNAGKQNIKGLTNQTGYVKGNANGVINFGTLTS 165