Miyakogusa Predicted Gene

Lj4g3v2264010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2264010.1 tr|C1MHW5|C1MHW5_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4627,39.82,0.000000000000001,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.50626.1
         (528 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g011480.2 | transmembrane protein, putative | HC | chr6:32...    59   2e-08
Medtr6g011480.1 | transmembrane protein, putative | HC | chr6:32...    59   2e-08

>Medtr6g011480.2 | transmembrane protein, putative | HC |
           chr6:3264506-3266527 | 20130731
          Length = 673

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 373 RVVPVFVLSLADVDSNLMMEDESMVWTSNDVVIVLEHQNAKIPLSYVSETYRRHALPSQA 432
           RVVPV+V  L D  S LM++         D+VI +  +N +    Y            + 
Sbjct: 419 RVVPVYVFDL-DYTSLLMLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFVHTREL 477

Query: 433 QRHILAGIASVVGGLSAPYEKASHVHERPVVNWLWAAGCHPFGPFSNTSHISQMLRDVAL 492
           +R I+  +   + G+S  +   S +H   +V++ W+ G  PFGPFS  S +S + +D A 
Sbjct: 478 ERPIVGSVLQSMWGVSPTHLNWSPLHNSTLVDYTWSMGQTPFGPFSQISSLSFVQKDAAK 537

Query: 493 RN 494
           RN
Sbjct: 538 RN 539


>Medtr6g011480.1 | transmembrane protein, putative | HC |
           chr6:3264506-3266527 | 20130731
          Length = 673

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 373 RVVPVFVLSLADVDSNLMMEDESMVWTSNDVVIVLEHQNAKIPLSYVSETYRRHALPSQA 432
           RVVPV+V  L D  S LM++         D+VI +  +N +    Y            + 
Sbjct: 419 RVVPVYVFDL-DYTSLLMLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFVHTREL 477

Query: 433 QRHILAGIASVVGGLSAPYEKASHVHERPVVNWLWAAGCHPFGPFSNTSHISQMLRDVAL 492
           +R I+  +   + G+S  +   S +H   +V++ W+ G  PFGPFS  S +S + +D A 
Sbjct: 478 ERPIVGSVLQSMWGVSPTHLNWSPLHNSTLVDYTWSMGQTPFGPFSQISSLSFVQKDAAK 537

Query: 493 RN 494
           RN
Sbjct: 538 RN 539