Miyakogusa Predicted Gene
- Lj4g3v2263920.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2263920.2 Non Characterized Hit- tr|I1MRT0|I1MRT0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10109
PE,74.51,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
RNA recognition motif,RNA recognition mot,CUFF.50625.2
(762 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 630 e-180
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 215 1e-55
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 214 3e-55
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 207 5e-53
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 187 4e-47
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 186 6e-47
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 182 1e-45
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 1e-18
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 3e-15
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 3e-15
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 3e-15
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 80 7e-15
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 80 7e-15
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 80 8e-15
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 80 8e-15
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 2e-14
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 74 4e-13
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 6e-13
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 6e-13
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 5e-12
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 70 1e-11
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-11
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-11
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-11
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 69 2e-11
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 69 2e-11
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 68 3e-11
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 68 3e-11
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 68 3e-11
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 68 3e-11
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 7e-11
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 7e-11
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-10
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-10
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 66 1e-10
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-10
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 1e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 66 2e-10
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 65 2e-10
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 65 3e-10
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 65 3e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-10
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 64 6e-10
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 64 6e-10
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 64 6e-10
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 9e-10
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 9e-10
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 9e-10
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 9e-10
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 63 1e-09
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 63 1e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 63 1e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 62 3e-09
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 61 3e-09
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 61 4e-09
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 5e-09
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 60 6e-09
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 60 6e-09
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 60 6e-09
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 60 6e-09
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 60 1e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 59 2e-08
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 2e-08
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 58 4e-08
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 4e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-07
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 56 1e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-07
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like pro... 55 2e-07
Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like pro... 55 2e-07
Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like pro... 55 2e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like pro... 55 2e-07
Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like pro... 55 2e-07
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 4e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 4e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 4e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-07
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 54 6e-07
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 7e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 8e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 8e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 8e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 5e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 5e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 9e-06
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 630 bits (1626), Expect = e-180, Method: Compositional matrix adjust.
Identities = 355/509 (69%), Positives = 381/509 (74%), Gaps = 46/509 (9%)
Query: 1 MNFNHR-TPAGFRSGGVTHHHRAFDSPPRRPMGGEAPXXXXXXXXRSMGGDGPGDFGFNS 59
MN+NHR +P GFR + H FDSPPR G R GG P G +
Sbjct: 1 MNYNHRRSPGGFRPAPL--HRSNFDSPPRWSPG------------RVGGGLRPPPAG-DG 45
Query: 60 NRLMGAEGSGEFGFNGHQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVG 119
R +G + EFGFN PPPLSGQKRGFPFS A P D SDGGNFAKLFVG
Sbjct: 46 FRPVGGD---EFGFN-LPPPPLSGQKRGFPFSGRGASP--------DHSDGGNFAKLFVG 93
Query: 120 SVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQL 179
SVPRTA EEDIRPLFEEHGNV+EVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHN+
Sbjct: 94 SVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRH 153
Query: 180 TLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRD 239
TLPGG+GPIQVRYADGERERLGAVEYKLFVGSLNKQA V EVEE+FSKYGR+EDVYLMRD
Sbjct: 154 TLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRD 213
Query: 240 ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFG 299
+ KQSRGCGFVKYS+RDMALAAIN LNGIYTMRGC+QPLIVRFADPKRPRQGDSRGPAFG
Sbjct: 214 DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFG 273
Query: 300 GSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPM-HPNMGPSSNAGFHGMGPPLLPKS 358
+GFGPR D+PGTRLPS SDPMGD +PP N WRP+ PN G S NAGFHGMGPPL+P+S
Sbjct: 274 SAGFGPRLDSPGTRLPSNNSDPMGDHIPPPNAWRPIPQPNTGTSFNAGFHGMGPPLIPRS 333
Query: 359 GDMALPTNAGGPMTGMGAHIDGRFQAQPLSPM-QQNFNQPRPQIPPVNQQTSPLQKPVHS 417
GDMALP NAGGPMTGMG IDGRFQ Q S M QQNFNQP+PQIPPVNQQ P QKP+ S
Sbjct: 334 GDMALPINAGGPMTGMGVSIDGRFQTQSPSAMPQQNFNQPQPQIPPVNQQIPPSQKPIQS 393
Query: 418 S-----------QTPIPYPQTSTHSSLRPRGQPQHPLSASPLPSQQGLGISGQFPXXXXX 466
S Q PIPYPQTST S R GQPQ PL A P QGLGI+ QF
Sbjct: 394 SQEFPPSHQLYPQAPIPYPQTSTRPSFRQHGQPQ-PLPAGP----QGLGINAQFSVSQPQ 448
Query: 467 XXXXPLSAKLPQAPLDSRVQSNTALRTPN 495
LSA PQ LD+ +QSNTAL TP+
Sbjct: 449 SQQGVLSATFPQTSLDTSMQSNTALTTPS 477
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 114/200 (57%), Gaps = 8/200 (4%)
Query: 561 QQNAEATNKQSPWAGTVAQGAVSTHXXXXXXXXXXXXXXXXXXXXXXQNTTLAKCNWTEH 620
Q +AEAT QS W GTV+Q A TH QNTTL CNWTEH
Sbjct: 544 QHHAEATKTQSQWGGTVSQAATGTHVAAPAAGVPSSTPATSSVQPISQNTTLGNCNWTEH 603
Query: 621 LSPEGFKYYYNSVTGESRWEKPEEFGLSEXXXX--XXXXXXXXXXSQPSVLXXXXXXXXX 678
LSPEGFKYYYNSVTGESRWEKPEE SE QPS+
Sbjct: 604 LSPEGFKYYYNSVTGESRWEKPEELTSSEQQKQLLNQSVQQSQIQGQPSIPPTQQVAQNQ 663
Query: 679 XXXXXSNLQGQVFNQQQMQLPSVSSSFQAYGVTGHQNNQEVGFKQLQASAISGGDPRRYS 738
S+ +GQV + QQ+Q P SSFQAYGVTGHQN QE+G+KQ Q S +S GDP RYS
Sbjct: 664 QVQPQSHFRGQV-HHQQIQQP---SSFQAYGVTGHQNVQELGYKQSQTSFVSAGDPGRYS 719
Query: 739 QFQGMNTAQELMWKNKPAGF 758
QG+N QELMWKN+P G
Sbjct: 720 --QGINNTQELMWKNRPTGV 737
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 145/231 (62%), Gaps = 20/231 (8%)
Query: 106 DRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATS 165
D+ D K++V VPRTA E D+R +F+ +G ++EV L++D+ TG QG C +KY+T
Sbjct: 66 DQVDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTF 125
Query: 166 EEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEY--------------KLFVGS 211
+EAD AI+AL NQ T PG P+ VR+AD +RER G ++ K++VG
Sbjct: 126 DEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGC 185
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTM 271
+N +A E+EEIFS YG +EDV ++R+ RG GFVK+ NR+MALAAI GL+ +TM
Sbjct: 186 INNEASKQEIEEIFSPYGHIEDVVVLRN-----RGYGFVKFYNREMALAAIKGLDRTFTM 240
Query: 272 RGCDQPLIVRFADPKRPRQGDSRGPAF-GGSGFGPRFDAPGTRLPSKVSDP 321
RGCDQPLIVRFA+PK+PR G+ RG + +GP P DP
Sbjct: 241 RGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFCDP 291
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 608 QNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSE 649
Q+ + +W+EH P+G KYYYN VT ESRWEKP E+ L +
Sbjct: 406 QDEEFPESDWSEHYCPDGNKYYYNCVTCESRWEKPGEYALYD 447
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 145/231 (62%), Gaps = 20/231 (8%)
Query: 106 DRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATS 165
D+ D K++V VPRTA E D+R +F+ +G ++EV L++D+ TG QG C +KY+T
Sbjct: 66 DQVDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTF 125
Query: 166 EEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEY--------------KLFVGS 211
+EAD AI+AL NQ T PG P+ VR+AD +RER G ++ K++VG
Sbjct: 126 DEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGC 185
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTM 271
+N +A E+EEIFS YG +EDV ++R+ RG GFVK+ NR+MALAAI GL+ +TM
Sbjct: 186 INNEASKQEIEEIFSPYGHIEDVVVLRN-----RGYGFVKFYNREMALAAIKGLDRTFTM 240
Query: 272 RGCDQPLIVRFADPKRPRQGDSRGPAF-GGSGFGPRFDAPGTRLPSKVSDP 321
RGCDQPLIVRFA+PK+PR G+ RG + +GP P DP
Sbjct: 241 RGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFCDP 291
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 137/203 (67%), Gaps = 19/203 (9%)
Query: 106 DRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATS 165
D+ D K++V VPRTA E D+R +F+ +G ++EV L++D+ TG QG C +KY+T
Sbjct: 66 DQVDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTF 125
Query: 166 EEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEY--------------KLFVGS 211
+EAD AI+AL NQ T PG P+ VR+AD +RER G ++ K++VG
Sbjct: 126 DEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGC 185
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTM 271
+N +A E+EEIFS YG +EDV ++R+ RG GFVK+ NR+MALAAI GL+ +TM
Sbjct: 186 INNEASKQEIEEIFSPYGHIEDVVVLRN-----RGYGFVKFYNREMALAAIKGLDRTFTM 240
Query: 272 RGCDQPLIVRFADPKRPRQGDSR 294
RGCDQPLIVRFA+PK+PR G+ R
Sbjct: 241 RGCDQPLIVRFAEPKKPRMGELR 263
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
K++VG + A +++I +F +G++ +V ++++R G F+K+ E A AI+
Sbjct: 180 KVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYG------FVKFYNREMALAAIKG 233
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEV 221
L T+ G P+ VR+A+ ++ R+G + + F+ S Q ++ +
Sbjct: 234 LDRTFTMRGCDQPLIVRFAEPKKPRMGELRF-CFLTSFFIQLCISVI 279
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 150/265 (56%), Gaps = 22/265 (8%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
E +S+ KLFVG VP+ E+++ LF+E V EV +IKD+ T +GCCF
Sbjct: 2 AETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCF 61
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVN 219
+ + +EAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K
Sbjct: 62 VICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEV 118
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
EV +FSKYG ++D+ ++R + S+GC F+KY ++ ALAA+ +NG + M G PL+
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 178
Query: 280 VRFADPKRPRQG---------------DSRGPAFGGS---GFGPRFDAPGTRLPSKVSDP 321
V++AD ++ RQ DS+ P+ G+ G+ P ++ G + P
Sbjct: 179 VKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGL- 237
Query: 322 MGDRMPPSNTWRPMHPNMGPSSNAG 346
M RMPP +P + NM P N G
Sbjct: 238 MPYRMPPPMQNQPGYHNMMPHMNQG 262
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 186 bits (473), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 150/265 (56%), Gaps = 22/265 (8%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
E +S+ KLFVG VP+ E+++ LF+E V EV +IKD+ T +GCCF
Sbjct: 2 AETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCF 61
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVN 219
+ + +EAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K
Sbjct: 62 VICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEV 118
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
EV +FSKYG ++D+ ++R + S+GC F+KY ++ ALAA+ +NG + M G PL+
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 178
Query: 280 VRFADPKRPRQG---------------DSRGPAFGGS---GFGPRFDAPGTRLPSKVSDP 321
V++AD ++ RQ DS+ P+ G+ G+ P ++ G + P
Sbjct: 179 VKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGL- 237
Query: 322 MGDRMPPSNTWRPMHPNMGPSSNAG 346
M RMPP +P + NM P N G
Sbjct: 238 MPYRMPPPMQNQPGYHNMMPHMNQG 262
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 150/266 (56%), Gaps = 23/266 (8%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
E +S+ KLFVG VP+ E+++ LF+E V EV +IKD+ T +GCCF
Sbjct: 2 AETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCF 61
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVN 219
+ + +EAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K
Sbjct: 62 VICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEV 118
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSR-GCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
EV +FSKYG ++D+ ++R + S+ GC F+KY ++ ALAA+ +NG + M G PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 178
Query: 279 IVRFADPKRPRQG---------------DSRGPAFGGS---GFGPRFDAPGTRLPSKVSD 320
+V++AD ++ RQ DS+ P+ G+ G+ P ++ G + P
Sbjct: 179 VVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGL 238
Query: 321 PMGDRMPPSNTWRPMHPNMGPSSNAG 346
M RMPP +P + NM P N G
Sbjct: 239 -MPYRMPPPMQNQPGYHNMMPHMNQG 263
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 107/198 (54%), Gaps = 14/198 (7%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
G+HS D A +VG++ EE + LF + G V+ V + KDR T QHQG F
Sbjct: 15 GQHSAERNQD----ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVN 219
+++ + E+AD AI+ L N + L G PI+V A +++ L V LF+G+L+
Sbjct: 71 VEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEK 126
Query: 220 EVEEIFSKYGR-VEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQP 277
+ + FS +G V + +MRD + SRG GF+ Y + + + +AI +NG Y C++
Sbjct: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQ 183
Query: 278 LIVRFADPKRPRQGDSRG 295
+ V +A K+ +G+ G
Sbjct: 184 ITVSYAY-KKDTKGERHG 200
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR ++D+R L E G+++E+ LIKDR+TG+ +G F+ Y T E A +AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
+HN+ + R L +++LF+G++ K +E + G VE
Sbjct: 164 DIHNKEFKGKTL-----------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 233 DVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGI-YTMRGCDQPLIVRFADPK 286
+ L++D QS RG FV Y N A + ++ + + + G V +ADPK
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITP--TVTWADPK 267
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+T E++ R E G +E + LIKD + +++G F+ Y + AD +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 173 RALHNQLTLPGGIGPIQVRYADGER---ERLGAVEYK-LFVGSLNKQAPVNEVEEIFSKY 228
+ + + GI P V +AD + + A + K L+V ++ + +++E+F ++
Sbjct: 245 QKMSSVGFKLDGITPT-VTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V V + + R GF+ Y+ R AL A+ Y + G Q L V A P+
Sbjct: 304 GEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEK-YEIDG--QALEVVIAKPQAE 360
Query: 289 RQGDSRGPAFGGSGFGP 305
++ D GG + P
Sbjct: 361 KKPD------GGYAYNP 371
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR ++D+R L E G+++E+ LIKDR+TG+ +G F+ Y T E A +AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
+HN+ + R L +++LF+G++ K +E + G VE
Sbjct: 164 DIHNKEFKGKTL-----------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 233 DVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGI-YTMRGCDQPLIVRFADPK 286
+ L++D QS RG FV Y N A + ++ + + + G V +ADPK
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITP--TVTWADPK 267
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+T E++ R E G +E + LIKD + +++G F+ Y + AD +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 173 RALHNQLTLPGGIGPIQVRYADGER---ERLGAVEYK-LFVGSLNKQAPVNEVEEIFSKY 228
+ + + GI P V +AD + + A + K L+V ++ + +++E+F ++
Sbjct: 245 QKMSSVGFKLDGITPT-VTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V V + + R GF+ Y+ R AL A+ Y + G Q L V A P+
Sbjct: 304 GEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEK-YEIDG--QALEVVIAKPQAE 360
Query: 289 RQGDSRGPAFGGSGFGP 305
++ D GG + P
Sbjct: 361 KKPD------GGYAYNP 371
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR ++D+R L E G+++E+ LIKDR+TG+ +G F+ Y T E A +AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
+HN+ + R L +++LF+G++ K +E + G VE
Sbjct: 164 DIHNKEFKGKTL-----------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 233 DVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGI-YTMRGCDQPLIVRFADPK 286
+ L++D QS RG FV Y N A + ++ + + + G V +ADPK
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITP--TVTWADPK 267
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+T E++ R E G +E + LIKD + +++G F+ Y + AD +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 173 RALHNQLTLPGGIGPIQVRYADGER---ERLGAVEYK-LFVGSLNKQAPVNEVEEIFSKY 228
+ + + GI P V +AD + + A + K L+V ++ + +++E+F ++
Sbjct: 245 QKMSSVGFKLDGITPT-VTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V V + + R GF+ Y+ R AL A+ Y + G Q L V A P+
Sbjct: 304 GEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEK-YEIDG--QALEVVIAKPQAE 360
Query: 289 RQGDSRGPAFGGSGFGP 305
++ D GG + P
Sbjct: 361 KKPD------GGYAYNP 371
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 40/221 (18%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + + A E+D+R +F E G V EV L+ + +T +++G F+++ E+A +A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 175 LHNQLT--LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--R 230
L N + G+ P Q D + L++G++ K ++E YG
Sbjct: 275 LKNPVINGKQCGVTPSQ----DSD---------TLYLGNICKTWTKEALKEKLKHYGVTN 321
Query: 231 VEDVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
VED+ L+ D N + +RG F+++S+R A+ A L G D+P V FAD
Sbjct: 322 VEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS--- 378
Query: 289 RQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPS 329
F PG + S+V D +PPS
Sbjct: 379 ------------------FIDPGDEIMSQVKTVFIDALPPS 401
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 40/221 (18%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + + A E+D+R +F E G V EV L+ + +T +++G F+++ E+A +A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 175 LHNQLT--LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--R 230
L N + G+ P Q D + L++G++ K ++E YG
Sbjct: 275 LKNPVINGKQCGVTPSQ----DSD---------TLYLGNICKTWTKEALKEKLKHYGVTN 321
Query: 231 VEDVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
VED+ L+ D N + +RG F+++S+R A+ A L G D+P V FAD
Sbjct: 322 VEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS--- 378
Query: 289 RQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPS 329
F PG + S+V D +PPS
Sbjct: 379 ------------------FIDPGDEIMSQVKTVFIDALPPS 401
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 40/221 (18%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + + A E+D+R +F E G V EV L+ + +T +++G F+++ E+A +A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 175 LHNQLT--LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--R 230
L N + G+ P Q D + L++G++ K ++E YG
Sbjct: 276 LKNPVINGKQCGVTPSQ----DSD---------TLYLGNICKTWTKEALKEKLKHYGVTN 322
Query: 231 VEDVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
VED+ L+ D N + +RG F+++S+R A+ A L G D+P V FAD
Sbjct: 323 VEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS--- 379
Query: 289 RQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPS 329
F PG + S+V D +PPS
Sbjct: 380 ------------------FIDPGDEIMSQVKTVFIDALPPS 402
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 40/221 (18%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + + A E+D+R +F E G V EV L+ + +T +++G F+++ E+A +A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 175 LHNQLT--LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--R 230
L N + G+ P Q D + L++G++ K ++E YG
Sbjct: 276 LKNPVINGKQCGVTPSQ----DSD---------TLYLGNICKTWTKEALKEKLKHYGVTN 322
Query: 231 VEDVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
VED+ L+ D N + +RG F+++S+R A+ A L G D+P V FAD
Sbjct: 323 VEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS--- 379
Query: 289 RQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPS 329
F PG + S+V D +PPS
Sbjct: 380 ------------------FIDPGDEIMSQVKTVFIDALPPS 402
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 34/224 (15%)
Query: 103 SHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKY 162
S S DG + K+F+G + R F ++G + + ++KDRKTGQ +G FI Y
Sbjct: 34 SQSLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITY 93
Query: 163 ATSEEADQAIRALH--------NQLTLP-GGIGPIQVRYADGERERLGAVEYKLFVGSLN 213
A D+ I H + T+P G +G R K+FVG +
Sbjct: 94 ADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTK------------KIFVGGIP 141
Query: 214 KQAPVNEVEEIFSKYGRVEDVYLMRDEN-KQSRGCGFVKYSNRDMALAAINGLNGIYTMR 272
+E + F++YG V+D +MRD + +SRG GFV + + ++ N I
Sbjct: 142 SNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKI---E 198
Query: 273 GCDQPLIVRFADPKRP--------RQGDSRGPAFGGSGFGPRFD 308
+ ++ A+PK+ R DSR ++G G+G +D
Sbjct: 199 FAGTQVEIKKAEPKKANAPPPSSKRYNDSR-SSYGSGGYGDAYD 241
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 46/279 (16%)
Query: 95 AGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQH 154
GP + D F +FV ++ + +++++ F E G + +++D G+
Sbjct: 194 VGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKS 252
Query: 155 QGCCFIKYATSEEADQAIRALHNQLTLPGG--IGPIQVRYADGERERLGAVEYK------ 206
+ F+ + ++++A +A+ AL+ + +G Q + ERE ++++
Sbjct: 253 KCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKK---SEREHELKIKFEQSMKEA 309
Query: 207 --------LFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMA 258
L+V +L+ +++E+FS YG + +MRD N SRG GFV +S + A
Sbjct: 310 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEA 369
Query: 259 LAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKV 318
A+ +NG +PL V A K R+ RL ++
Sbjct: 370 SRALLEMNGKMV---ASKPLYVTLAQRKEDRRA---------------------RLQAQF 405
Query: 319 SDPMGDRMPPSNTWR-PMHPNMGPS-SNAGFHGMGPPLL 355
+ MPPS R PM+P GP F+G GPP +
Sbjct: 406 AQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAI 444
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + + + LF + G V+ V + +D T + G ++ Y+ ++A +A+ L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
+ P PI++ Y+ + + + +F+ +L+K + + FS +G +
Sbjct: 96 N---FTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCK 152
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D + QS+G GFV++ + A AI LNG+
Sbjct: 153 VAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGM 185
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLF+G + EE +R F +G V E ++KDR TG+ +G F+ + AD ++
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 174 ALHN----------------QLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAP 217
HN Q L G I G R R K+FVG L
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG-RTR------KIFVGGLASTVT 118
Query: 218 VNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNGIYTMR 272
++ ++ F ++G + DV +M D N Q RG GF+ Y + + + L + LNG
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG----- 173
Query: 273 GCDQPLIVRFADPKRPRQGDSRGPAFG 299
+ + V+ A PK G +R P G
Sbjct: 174 ---KMVEVKRAVPKELSPGPARSPLSG 197
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLF+G + EE +R F +G V E ++KDR TG+ +G F+ + AD ++
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 174 ALHN----------------QLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAP 217
HN Q L G I G R R K+FVG L
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG-RTR------KIFVGGLASTVT 118
Query: 218 VNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNGIYTMR 272
++ ++ F ++G + DV +M D N Q RG GF+ Y + + + L + LNG
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG----- 173
Query: 273 GCDQPLIVRFADPKRPRQGDSRGPAFG 299
+ + V+ A PK G +R P G
Sbjct: 174 ---KMVEVKRAVPKELSPGPARSPLSG 197
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 109 DGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEA 168
DG + K+F+G + + E+ FE +G + + ++KDR TG+ +G FI YA +
Sbjct: 13 DGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVV 72
Query: 169 DQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKY 228
DQ I+ H + I+ G + K+FVG + +E++ FSK+
Sbjct: 73 DQVIQENH---IINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKH 129
Query: 229 GRVEDVYLMRDE-NKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKR 287
G V + ++RD K+SRG GFV + + D A+ + + M D + ++ A+PK+
Sbjct: 130 GNVVEHEIIRDHTTKRSRGFGFVVF-DSDKAVDNLLADGNMIDM--DDTQVEIKKAEPKK 186
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 9/177 (5%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F G VI + +I+++ TGQ +G FI++ + A++ ++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT- 75
Query: 176 HNQLTLPGGIGPIQVRYAD---GERERLGAVEYKLFVGSLNKQAPVNEVEEIF-SKYGRV 231
+N +PG ++ +A GER ++ +FVG L ++E F + YG V
Sbjct: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
Query: 232 EDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKR 287
++ D N +S+G GFVK+S+ A++ +NG+Y +P+ + A PK+
Sbjct: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYC---STRPMRISAATPKK 189
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI-- 172
KLF+G + E+ +R F+ G+V+E ++KDR TG+ +G F+ +A A++ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 173 ------RALHNQLTLPGGIGPIQVRY---ADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
R + + +P + R + G K+FVG L ++ +
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKN 124
Query: 224 IFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD 256
F ++G + DV +M D N Q RG GF+ Y + +
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI-- 172
KLF+G + E+ +R F+ G+V+E ++KDR TG+ +G F+ +A A++ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 173 ------RALHNQLTLPGGIGPIQVRY---ADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
R + + +P + R + G K+FVG L ++ +
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKN 124
Query: 224 IFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD 256
F ++G + DV +M D N Q RG GF+ Y + +
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI-- 172
KLF+G + E+ +R F+ G+V+E ++KDR TG+ +G F+ +A A++ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 173 ------RALHNQLTLPGGIGPIQVRY---ADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
R + + +P + R + G K+FVG L ++ +
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKN 124
Query: 224 IFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD 256
F ++G + DV +M D N Q RG GF+ Y + +
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F +P A E D+ F + G V +V LI DR + + +G +I++ + AI AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 176 HNQLTLPGGIGPIQVRYADGERERL---------------GAVEYKLFVGSLNKQAPVNE 220
QL L P+ V+ ++ E+ + GAV+ KL+VG+L+ ++
Sbjct: 276 SGQLLLGQ---PVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 221 VEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
+ EIF +G VE V L D E +G GF+++++ + A AA LNG + G +
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIK-V 390
Query: 280 VRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMP---PSNTWRPMH 336
AD + ++ F G +A L + D G P N P
Sbjct: 391 SSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGLAPAQ 450
Query: 337 PNMG-PSSNAGFHGMGPPLLPKSGDMALPT 365
P + P N G + P L+P G +ALPT
Sbjct: 451 PAISLPIGNTGL--IHPGLIPAPG-LALPT 477
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 42/212 (19%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE ++ F +G VIE +++DR TG+ +G F+ ++ A++
Sbjct: 4 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 63
Query: 172 IRALHNQLTLPGGIGPIQVRYADGER-----------ERLGAVE--------YKLFVGSL 212
I H I R + ++ + G+V+ K+FVG L
Sbjct: 64 IIDKH----------IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGL 113
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNG 267
++ + F ++G + DV +M D N Q RG GF+ Y + + + + LNG
Sbjct: 114 PSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG 173
Query: 268 IYTMRGCDQPLIVRFADPKRPRQGDSRGPAFG 299
+ + V+ A PK G +R P G
Sbjct: 174 --------KMVEVKRAVPKELSPGPTRSPLIG 197
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 42/212 (19%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE ++ F +G VIE +++DR TG+ +G F+ ++ A++
Sbjct: 4 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 63
Query: 172 IRALHNQLTLPGGIGPIQVRYADGER-----------ERLGAVE--------YKLFVGSL 212
I H I R + ++ + G+V+ K+FVG L
Sbjct: 64 IIDKH----------IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGL 113
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNG 267
++ + F ++G + DV +M D N Q RG GF+ Y + + + + LNG
Sbjct: 114 PSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG 173
Query: 268 IYTMRGCDQPLIVRFADPKRPRQGDSRGPAFG 299
+ + V+ A PK G +R P G
Sbjct: 174 --------KMVEVKRAVPKELSPGPTRSPLIG 197
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F +P A E D+ F + G V +V LI DR + + +G +I++ + AI AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 176 HNQLTLPGGIGPIQVRYADGERERL---------------GAVEYKLFVGSLNKQAPVNE 220
QL L P+ V+ ++ E+ + GAV+ KL+VG+L+ ++
Sbjct: 276 SGQLLLGQ---PVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 221 VEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
+ EIF +G VE V L D E +G GF+++++ + A AA LNG + G +
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIK-V 390
Query: 280 VRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMP---PSNTWRPMH 336
AD + ++ F G +A L + D G P N P
Sbjct: 391 SSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGLAPAQ 450
Query: 337 PNMG-PSSNAGFHGMGPPLLPKSGDMALPT 365
P + P N G + P L+P G +ALPT
Sbjct: 451 PAISLPIGNTGL--IHPGLIPAPG-LALPT 477
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F +P A E D+ F + G V +V LI DR + + +G +I++ + AI AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 176 HNQLTLPGGIGPIQVRYADGERERL---------------GAVEYKLFVGSLNKQAPVNE 220
QL L P+ V+ ++ E+ + GAV+ KL+VG+L+ ++
Sbjct: 276 SGQLLLGQ---PVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 221 VEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
+ EIF +G VE V L D E +G GF+++++ + A AA LNG + G +
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIK-V 390
Query: 280 VRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMP---PSNTWRPMH 336
AD + ++ F G +A L + D G P N P
Sbjct: 391 SSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGLAPAQ 450
Query: 337 PNMG-PSSNAGFHGMGPPLLPKSGDMALPT 365
P + P N G + P L+P G +ALPT
Sbjct: 451 PAISLPIGNTGL--IHPGLIPAPG-LALPT 477
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 106 DRSDGGN--FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYA 163
+RS+ G+ F ++V ++ T +ED++ LF +G + ++KD + G + F+ +
Sbjct: 95 ERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQ 153
Query: 164 TSEEADQAIRALHNQLTLPGGIGPI-----------QVRYADGERERLGAVEY----KLF 208
+ + A A+ L+ T G + + ++R A E+E++ E L+
Sbjct: 154 SPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELR-AKFEQEKIKRYEKLQGANLY 212
Query: 209 VGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ +L++ +++E+FS++G + +M D + S+G GFV +S + A AING++G
Sbjct: 213 LKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGK 272
Query: 269 YTMRGCDQPLIVRFADPKRPRQ 290
+ +PL V A K R+
Sbjct: 273 IIGQ---KPLYVVVAQRKEDRK 291
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 9/186 (4%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
FA +FV ++ + + + F G V+ + D G+ G F++Y E A AI
Sbjct: 14 FANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAI 72
Query: 173 RALHNQLTL--PGGIGPIQVRYADGERERLGAVEY-KLFVGSLNKQAPVNEVEEIFSKYG 229
L L +G R ER G+ ++ ++V +L + +++++FS YG
Sbjct: 73 EKLDGMLIKDKKAFVGYFIRR---QERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYG 129
Query: 230 RVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPR 289
+ +M+DEN S+ GFV + + D A AA+ LNG T G + L V A K R
Sbjct: 130 VITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDG--KVLYVGRAQRKCER 187
Query: 290 QGDSRG 295
+ + R
Sbjct: 188 EAELRA 193
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
AKLF+G V + E +R F +G+V++ +I DR TG+ +G FI +ATSEEA A++
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 174 ALHNQLTLPGGIGPIQVRYADGERER 199
A+ N+ L G ++V YA ER R
Sbjct: 100 AMDNK-ELDG--RTVRVNYAT-ERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
AKLF+G V + E +R F +G+V++ +I DR TG+ +G FI +ATSEEA A++
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 174 ALHNQLTLPGGIGPIQVRYADGERER 199
A+ N+ L G ++V YA ER R
Sbjct: 100 AMDNK-ELDG--RTVRVNYAT-ERAR 121
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+LFVG++P + + LF E GNV+ V ++ D T + +G F+ E+A++AIR
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 175 LHNQLTLPGGIGPIQVRYAD----GERERLGAVE-------YKLFVGSLNKQAPVNEVEE 223
T GG I+V + + G+R ++G+ +K++ G+L + +
Sbjct: 169 FDG--TTVGG-RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 224 IFSKY-GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRF 282
F+K G + + N +SRG GFV + + A++ +NG+ ++G +PL ++
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV-EVQG--RPLRLKL 282
Query: 283 A-DPKRPRQGD 292
A D ++P D
Sbjct: 283 AVDNRKPSSLD 293
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+LFVG++P + + LF E GNV+ V ++ D T + +G F+ E+A++AIR
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 175 LHNQLTLPGGIGPIQVRYAD----GERERLGAVE-------YKLFVGSLNKQAPVNEVEE 223
T GG I+V + + G+R ++G+ +K++ G+L + +
Sbjct: 169 FDG--TTVGG-RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 224 IFSKY-GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRF 282
F+K G + + N +SRG GFV + + A++ +NG+ ++G +PL ++
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV-EVQG--RPLRLKL 282
Query: 283 A-DPKRPRQGD 292
A D ++P D
Sbjct: 283 AVDNRKPSSLD 293
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + + + LF + G V+ V + +D + Q G ++ ++ +A +A+ L
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 176 HNQLTLPGGIGPIQVRYA--DGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
+ P PI++ Y+ D + GA +F+ +L++ + + FS +G +
Sbjct: 86 N---FTPLNNKPIRIMYSHRDPSVRKSGAA--NIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIV 280
+ D + S+G GFV++ N + A +AI+ LNG M D+P+ V
Sbjct: 141 CKIAMDASGLSKGYGFVQFENEESAQSAIDKLNG---MLLNDKPVYV 184
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 102 HSHSD---RSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCC 158
+SH D R G A +F+ ++ R + + F GN++ + D +G +G
Sbjct: 99 YSHRDPSVRKSGA--ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYG 155
Query: 159 FIKYATSEEADQAIRALHNQLT--LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQA 216
F+++ E A AI L+ L P +G Q R D + A ++V +L++
Sbjct: 156 FVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQ-RKQDRDNALSNAKFNNVYVKNLSESV 214
Query: 217 PVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
++++ F +YG + +MRD + +S+ GFV + N D A A+ LNG
Sbjct: 215 TDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 15/202 (7%)
Query: 76 HQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFE 135
H P + K+ F + A S + + ++++ + +L +VP ++ ED+R LFE
Sbjct: 51 HTPTLIITTKQHFNSTLRFASTSEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFE 110
Query: 136 EHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADG 195
++G V+ V L K +++G F++ + EEA +A+ +L + G I I ++YA
Sbjct: 111 KYGKVLHVELSMYNK-NRNRGLAFVEMGSPEEASEALNSLQS-YEFDGRI--INIQYAKP 166
Query: 196 ERERLGA------VEYKLFVGSLNKQAPVNEVEEIF-SKYGRVEDVYLMRDEN-KQSRGC 247
++E++ + Y LFV + +A +V+E F S G+V ++ EN ++ G
Sbjct: 167 KKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGY 226
Query: 248 GFVKYSNR---DMALAAINGLN 266
GFV Y ++ D ALA G N
Sbjct: 227 GFVSYKSKKEADEALAEFQGKN 248
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 15/202 (7%)
Query: 76 HQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFE 135
H P + K+ F + A S + + ++++ + +L +VP ++ ED+R LFE
Sbjct: 51 HTPTLIITTKQHFNSTLRFASTSEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFE 110
Query: 136 EHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADG 195
++G V+ V L K +++G F++ + EEA +A+ +L + G I I ++YA
Sbjct: 111 KYGKVLHVELSMYNK-NRNRGLAFVEMGSPEEASEALNSLQS-YEFDGRI--INIQYAKP 166
Query: 196 ERERLGA------VEYKLFVGSLNKQAPVNEVEEIF-SKYGRVEDVYLMRDEN-KQSRGC 247
++E++ + Y LFV + +A +V+E F S G+V ++ EN ++ G
Sbjct: 167 KKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGY 226
Query: 248 GFVKYSNR---DMALAAINGLN 266
GFV Y ++ D ALA G N
Sbjct: 227 GFVSYKSKKEADEALAEFQGKN 248
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F +P A E D+ F + G V +V LI DR + + +G +I++ + AI AL
Sbjct: 204 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 262
Query: 176 HNQLTLPGGIGPIQVRYADGERERL--------------GAVEYKLFVGSLNKQAPVNEV 221
QL L P+ V+ ++ E+ + GAV+ KL+VG+L+ +
Sbjct: 263 SGQLLLG---QPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 222 EEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRG 273
EIF +G++E V L D E +G GFV++++ + A AA LNG + G
Sbjct: 320 REIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA-QSLNGKLEIAG 371
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
K+FVG++P E + LFE+ G V +I +R T + +G F+ +TSEE ++A+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 175 LHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR 230
L G + + G + R + +VG+L + +E++FS++G+
Sbjct: 183 FSG-FELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGK 241
Query: 231 VEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNG 267
VE ++ D E +SRG GFV SN AI L+G
Sbjct: 242 VESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDG 279
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++ + E+D++ F +G + L++D G+ + F+ + +E+A +A+
Sbjct: 210 FNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAV 268
Query: 173 RALHNQLTLPGG--IGPIQVRYADGERERLGAVE-------------YKLFVGSLNKQAP 217
AL+ + +G Q + ++ E+E G E L++ +L+
Sbjct: 269 EALNGKKVDDKEWYVGKAQ-KKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSIT 327
Query: 218 VNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQP 277
+++E+FS++G + +MRD N SRG GFV +S + A A+ +NG +P
Sbjct: 328 DEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMI---VSKP 384
Query: 278 LIVRFADPKRPRQG 291
L V A K R+
Sbjct: 385 LYVAVAQRKEDRRA 398
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + + + LF + G V+ V + +D T + G ++ + ++A +A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
+ P I+V Y+ + + +F+ +L+K + + FS +G++
Sbjct: 94 N---FTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCK 150
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D + QS+G GFV++ D A AI+ LNG+
Sbjct: 151 IATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGM 183
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 39/255 (15%)
Query: 108 SDGGNFAKLFVGSVPRTACEEDIRPLFEE-HGNVIEVALIKDRKTGQHQGCCFIKYATSE 166
SD +FVG + + + F + +V ++ D TG+ +G F+++
Sbjct: 184 SDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDES 243
Query: 167 EADQAIRALHNQL--TLPGGIGPIQVRYADGER-----------ERLGAVEYKLFVGSLN 213
E QA+ ++ + P IG R + G + + +FVG L+
Sbjct: 244 ERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLD 303
Query: 214 KQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRG 273
++++ FS+YG + V + +GCGFV+++NR+ A A+ LNG TM G
Sbjct: 304 SNVTDEDLKQTFSQYGEIASVKI-----PVGKGCGFVQFANRNNAEEALQKLNG--TMIG 356
Query: 274 CDQPLIVRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWR 333
VR + + P R GS GP F PS + D G MP
Sbjct: 357 KQ---TVRLSWGRNPAYKQFRLDV--GSWAGPYF-------PSPIYDGYGYAMP-----S 399
Query: 334 PMH-PNMGPSSNAGF 347
P H P+M P + G+
Sbjct: 400 PHHDPSMYPLAYGGY 414
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
AKLFVG + R E+ ++ F ++G+V+ + DR T +G F+ ++ A A++
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERL--------GAVEY-------------KLFVGSL 212
H L ++VR A E+L G Y K+FVG L
Sbjct: 70 DTHAILGR-----KVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDE-NKQSRGCGFVKYSNRD----MALAAINGLNG 267
V E + F ++GR+ DV +M+D + RG GF+ + + D + + + + LNG
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 102 HSHSDRSDGG-NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFI 160
H R++G F ++V ++ + +ED++ LF G + ++KD G+ + F+
Sbjct: 196 HQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFV 254
Query: 161 KYATSEEADQAIR-----ALHNQLTLPGGIGPIQVR-----YADGERERLGAVE----YK 206
+ + + A A+ A+++ L G + A E+ER+ E
Sbjct: 255 NFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN 314
Query: 207 LFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLN 266
L++ +L+ +++++FS++G V +M D + S+G GFV +S + A A+N +N
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMN 374
Query: 267 GIYTMRGCDQPLIVRFADPKRPRQG 291
G R +PL V A K R+
Sbjct: 375 GKLVGR---KPLFVAVAQRKEERKA 396
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
A L+VG + + E + LF + V+ + + +D+ G ++ + +++A A
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
L+ P PI++ ++ + + +F+ +L+ + + F+ +G V
Sbjct: 90 LLN---FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS 146
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYT 270
+ D N QS+G GFV++ N + A +AI L+G+
Sbjct: 147 CKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLI 183
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 107 RSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSE 166
+S GN +F+ ++ + + + F G V+ + D GQ +G F+++ E
Sbjct: 114 KSGSGN---VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEE 169
Query: 167 EADQAIRALHNQLTLPGGIGP-IQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIF 225
A AI+ L L + VR+ + R ++V ++++ + +++++F
Sbjct: 170 AAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLF 229
Query: 226 SKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADP 285
+G + +M+D N +SR GFV + + D A AA+ LNG T D+ L V A
Sbjct: 230 GPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNG--TAINDDKVLFVGRAQR 287
Query: 286 KRPRQGDSRG 295
K R+ + +
Sbjct: 288 KAERENELKA 297
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 102 HSHSDRSDGG-NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFI 160
H R++G F ++V ++ + +ED++ LF G + ++KD G+ + F+
Sbjct: 196 HQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFV 254
Query: 161 KYATSEEADQAIR-----ALHNQLTLPGGIGPIQVR-----YADGERERLGAVE----YK 206
+ + + A A+ A+++ L G + A E+ER+ E
Sbjct: 255 NFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN 314
Query: 207 LFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLN 266
L++ +L+ +++++FS++G V +M D + S+G GFV +S + A A+N +N
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMN 374
Query: 267 GIYTMRGCDQPLIVRFADPKRPRQG 291
G R +PL V A K R+
Sbjct: 375 GKLVGR---KPLFVAVAQRKEERKA 396
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
A L+VG + + E + LF + V+ + + +D+ G ++ + +++A A
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
L+ P PI++ ++ + + +F+ +L+ + + F+ +G V
Sbjct: 90 LLN---FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS 146
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYT 270
+ D N QS+G GFV++ N + A +AI L+G+
Sbjct: 147 CKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLI 183
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 107 RSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSE 166
+S GN +F+ ++ + + + F G V+ + D GQ +G F+++ E
Sbjct: 114 KSGSGN---VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEE 169
Query: 167 EADQAIRALHNQLTLPGGIGP-IQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIF 225
A AI+ L L + VR+ + R ++V ++++ + +++++F
Sbjct: 170 AAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLF 229
Query: 226 SKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADP 285
+G + +M+D N +SR GFV + + D A AA+ LNG T D+ L V A
Sbjct: 230 GPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNG--TAINDDKVLFVGRAQR 287
Query: 286 KRPRQGDSRG 295
K R+ + +
Sbjct: 288 KAERENELKA 297
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 102 HSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIK 161
H H S N L+VG + E + F G + + +I++++T Q +G F++
Sbjct: 82 HVHHGSSAADN-KTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVE 140
Query: 162 YATSEEADQAIRALHNQLTLPGGIGPIQVRYAD---GERERLGAV-EYKLFVGSLNKQAP 217
+ + A++ ++ L +P P ++ +A G+ +R V + +FVG L
Sbjct: 141 FTSHGTAEKVLQTYAGML-MPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVT 199
Query: 218 VNEVEEIFS-KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
+ E FS KY V+ ++ D N +S+G GFV++ + A+N +NG++
Sbjct: 200 DTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVF 253
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++++G +P E+D+R + G V EV ++K ++ +G F+ + T E A +A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 174 ALHNQLTLPGGI--GPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N I P QV+ ++LF+GS+ K+ V +++++ +K G
Sbjct: 158 ELNNSEFKGRKIKCSPSQVK-------------HRLFIGSVPKEWTVEDMKKVVAKVGPG 204
Query: 231 VEDVYLMRD--ENKQSRGCGFVKYSNRDMALAAINGL-NGIYTMRGCDQPLIVRFADPK 286
V V L++D + ++RG F++Y N A + + N + + D IV +ADP+
Sbjct: 205 VISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDA--IVSWADPR 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHG-NVIEVALIKD-RKTGQHQGCCFIKY---ATSEEAD 169
+LF+GSVP+ ED++ + + G VI V L+KD + + +++G FI+Y A +E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 170 QAIRALHNQLTLPGGIGPIQVRYAD------GERERLGAVEYKLFVGSLNKQAPVNEVEE 223
Q + + +L I V +AD ++ AV +V +L + N ++E
Sbjct: 239 QKMSNSNFKLDNNDAI----VSWADPRNSESSSSSQVKAV----YVKNLPENITQNRLKE 290
Query: 224 IFSKYGRVEDVYL--MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVR 281
+F +G++ V L + ++SR GFV +++R A+ A+ Y + G Q L
Sbjct: 291 LFEHHGKITKVALPPAKAGQEKSR-YGFVHFADRSSAMKALKNTEK-YEING--QTLECS 346
Query: 282 FADPK 286
A P+
Sbjct: 347 LAKPQ 351
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++++G +P E+D+R + G V EV ++K ++ +G F+ + T E A +A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 174 ALHNQLTLPGGI--GPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N I P QV+ ++LF+GS+ K+ V +++++ +K G
Sbjct: 158 ELNNSEFKGRKIKCSPSQVK-------------HRLFIGSVPKEWTVEDMKKVVAKVGPG 204
Query: 231 VEDVYLMRD--ENKQSRGCGFVKYSNRDMALAAINGL-NGIYTMRGCDQPLIVRFADPK 286
V V L++D + ++RG F++Y N A + + N + + D IV +ADP+
Sbjct: 205 VISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDA--IVSWADPR 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHG-NVIEVALIKD-RKTGQHQGCCFIKY---ATSEEAD 169
+LF+GSVP+ ED++ + + G VI V L+KD + + +++G FI+Y A +E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 170 QAIRALHNQLTLPGGIGPIQVRYAD------GERERLGAVEYKLFVGSLNKQAPVNEVEE 223
Q + + +L I V +AD ++ AV +V +L + N ++E
Sbjct: 239 QKMSNSNFKLDNNDAI----VSWADPRNSESSSSSQVKAV----YVKNLPENITQNRLKE 290
Query: 224 IFSKYGRVEDVYL--MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVR 281
+F +G++ V L + ++SR GFV +++R A+ A+ Y + G Q L
Sbjct: 291 LFEHHGKITKVALPPAKAGQEKSR-YGFVHFADRSSAMKALKNTEK-YEING--QTLECS 346
Query: 282 FADPK 286
A P+
Sbjct: 347 LAKPQ 351
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++++G +P E+D+R + G V EV ++K ++ +G F+ + T E A +A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 174 ALHNQLTLPGGI--GPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N I P QV+ ++LF+GS+ K+ V +++++ +K G
Sbjct: 158 ELNNSEFKGRKIKCSPSQVK-------------HRLFIGSVPKEWTVEDMKKVVAKVGPG 204
Query: 231 VEDVYLMRD--ENKQSRGCGFVKYSNRDMALAAINGL-NGIYTMRGCDQPLIVRFADPK 286
V V L++D + ++RG F++Y N A + + N + + D IV +ADP+
Sbjct: 205 VISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDA--IVSWADPR 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHG-NVIEVALIKD-RKTGQHQGCCFIKY---ATSEEAD 169
+LF+GSVP+ ED++ + + G VI V L+KD + + +++G FI+Y A +E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 170 QAIRALHNQLTLPGGIGPIQVRYAD------GERERLGAVEYKLFVGSLNKQAPVNEVEE 223
Q + + +L I V +AD ++ AV +V +L + N ++E
Sbjct: 239 QKMSNSNFKLDNNDAI----VSWADPRNSESSSSSQVKAV----YVKNLPENITQNRLKE 290
Query: 224 IFSKYGRVEDVYL--MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVR 281
+F +G++ V L + ++SR GFV +++R A+ A+ Y + G Q L
Sbjct: 291 LFEHHGKITKVALPPAKAGQEKSR-YGFVHFADRSSAMKALKNTEK-YEING--QTLECS 346
Query: 282 FADPK 286
A P+
Sbjct: 347 LAKPQ 351
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++++G +P E+D+R + G V EV ++K ++ +G F+ + T E A +A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 174 ALHNQLTLPGGI--GPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N I P QV+ ++LF+GS+ K+ V +++++ +K G
Sbjct: 158 ELNNSEFKGRKIKCSPSQVK-------------HRLFIGSVPKEWTVEDMKKVVAKVGPG 204
Query: 231 VEDVYLMRD--ENKQSRGCGFVKYSNRDMALAAINGL-NGIYTMRGCDQPLIVRFADPK 286
V V L++D + ++RG F++Y N A + + N + + D IV +ADP+
Sbjct: 205 VISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDA--IVSWADPR 261
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHG-NVIEVALIKD-RKTGQHQGCCFIKY---ATSEEAD 169
+LF+GSVP+ ED++ + + G VI V L+KD + + +++G FI+Y A +E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 170 QAIRALHNQLTLPGGIGPIQVRYAD------GERERLGAVEYKLFVGSLNKQAPVNEVEE 223
Q + + +L I V +AD ++ AV +V +L + N ++E
Sbjct: 239 QKMSNSNFKLDNNDAI----VSWADPRNSESSSSSQVKAV----YVKNLPENITQNRLKE 290
Query: 224 IFSKYGRVEDVYL--MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVR 281
+F +G++ V L + ++SR GFV +++R A+ A+ Y + G Q L
Sbjct: 291 LFEHHGKITKVALPPAKAGQEKSR-YGFVHFADRSSAMKALKNTEK-YEING--QTLECS 346
Query: 282 FADPK 286
A P+
Sbjct: 347 LAKPQ 351
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 89 PFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLF-EEHGNVIEVALIK 147
PF A S G+H RSD +FVG + + + F +++ +V ++
Sbjct: 165 PFRLNWATFSTGDHK---RSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVF 221
Query: 148 DRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGG--IGPIQVRYADGERE------- 198
D TG+ +G F+++ E +A+ ++ IG R + G ++
Sbjct: 222 DANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGT 281
Query: 199 ----RLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSN 254
+ +FVG L+ A ++ + FS+YG + V + +GCGFV+++N
Sbjct: 282 PSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFAN 336
Query: 255 RDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSR--------GPAFGGSGFGPR 306
R+ A A+ LNG + VR + + P R GPA+ G GP
Sbjct: 337 RNNAEEALQKLNGTTVGK-----QTVRLSWGRNPANKQFRSEFGSPWNGPAYYG---GPA 388
Query: 307 FDAPGTRLP 315
+D G +P
Sbjct: 389 YDGYGYAMP 397
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 73 FNGHQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRP 132
F Q +S Q+ P +S + P E SD +L+VG++P + +
Sbjct: 72 FETSQDTIISQQQEPEPETSDK--PKQDEEQKVTTSDDA--GRLYVGNLPFSMTSSQLAD 127
Query: 133 LFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQV-- 190
+F E G V+ V ++ DR T + +G F+ ++EEA +AIR + + + G +
Sbjct: 128 IFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIR-MFDGSQVGGRSAKVNFPE 186
Query: 191 ------RYADGERER---LGAVE--YKLFVGSLNKQAPVNEVEEIFSKY-GRVEDVYLMR 238
R G++ R G V+ +K++ G+L ++ + F + G + +
Sbjct: 187 VPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYE 246
Query: 239 DENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+N +SRG GFV + + AA+N +NG+
Sbjct: 247 RDNGRSRGFGFVTFETAEHLEAALNAMNGV 276
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++ + ED++ LF G VI LI G + F+ + +S+ A A+
Sbjct: 199 FTNVYVKNLSESYTYEDLKQLFNSFG-VITSVLIMKYDNGNSKCFGFVNFQSSDSAATAV 257
Query: 173 RALHNQLTLPGGI---GPIQVR-------YADGERERLGAVEY----KLFVGSLNKQAPV 218
L+ T G + G Q + A E+E+L E L++ +++K
Sbjct: 258 EKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNE 317
Query: 219 NEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
+++E+FS++G + +M D +S+G GFV ++ + A AI+ +NG +P+
Sbjct: 318 EKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKII---GQKPV 374
Query: 279 IVRFADPKRPRQG 291
V A K R+
Sbjct: 375 YVSVAQRKEERKA 387
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
FA LF+ ++ + + + F GNV+ + D G +G F+++ + A AI
Sbjct: 112 FANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAI 170
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVE 232
L L + V Y +ER ++V +L++ +++++F+ +G +
Sbjct: 171 EKLDGMLM---NDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGVIT 227
Query: 233 DVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGD 292
V +M+ +N S+ GFV + + D A A+ LNG T G + L V A K R+ +
Sbjct: 228 SVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDG--KVLFVGRAQKKSEREAE 285
Query: 293 SRG 295
+
Sbjct: 286 LKA 288
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 25/194 (12%)
Query: 90 FSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVA-LIKD 148
F A S GE H D D +FVG + + + +F N ++ A ++ D
Sbjct: 147 FRLNWATFSSGEKRHDDSPD----YTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVID 202
Query: 149 RKTGQHQGCCFIKYATSEEADQAIRALHNQL--TLPGGIGP-------IQVRYADGERER 199
R TG+ +G F+++A E +A+ + L T P IGP Q A + +
Sbjct: 203 RTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQ 262
Query: 200 LGAVE------YKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYS 253
GA +FVG+L+ ++++F++YG + V + + CGFV+++
Sbjct: 263 GGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKI-----PSGKRCGFVQFA 317
Query: 254 NRDMALAAINGLNG 267
+R A A+ LNG
Sbjct: 318 DRSSAEEALRVLNG 331
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F G V V +I++++T Q +G F+++ + A++ ++
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 176 HNQLTLPGGIGPIQVRYA---DGERERLGAVEYKLFVGSLNKQAPVNEVEEIF-SKYGRV 231
N +P G ++ +A GE+ + +Y +FVG L + + E+F ++Y V
Sbjct: 136 -NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSV 194
Query: 232 EDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGI 268
+ ++ D +++G GFV++++ + A+ + G+
Sbjct: 195 KGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGV 232
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + R EED++ +F+ G V+EV L K+ T +++G +++A E A +A+
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR--VE 232
+ N + G D LF+G++ V++ YG VE
Sbjct: 479 MKNPVIRGKRCGTSPSEDND-----------TLFLGNICNTWTKEAVKQKLKDYGVEGVE 527
Query: 233 DVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRG-CDQPLIVRFADPKR 287
++ L+ D + SRG F+++S A+ A L + G ++ V FA+P R
Sbjct: 528 NITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIR 585
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 19/189 (10%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI- 172
AKLFVG+ P E + LF + G V +I +R+T +G F+ +T EEA+ A+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 173 ---------RALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
R+L P G P + A E + +++V +L + + +E+
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPV----LRIYVANLAWEVDNSRLEQ 224
Query: 224 IFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRF 282
+FS++G++ ++ D E +SRG GFV S+ AI L+G ++ G + + V
Sbjct: 225 VFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG-QSLEG--RTIRVSV 281
Query: 283 ADPKRPRQG 291
A+ RPR+G
Sbjct: 282 AE-DRPRRG 289
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL+ G++P + + L EE+G+ + ++ DR TG+ +G F+ + E+ + I+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 175 LHNQLTLPGGIGPIQVRYADGERER---LGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRV 231
L + + ++V ++D + + EYKLFVG+L + + F ++G V
Sbjct: 174 LDGKEFMG---RTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTV 230
Query: 232 EDVYLMRD-ENKQSRGCGFVKYSNR---DMALAAINGL 265
++ D E +SRG GFV Y+ + D ALA ++ +
Sbjct: 231 VGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNV 268
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG++ T E + F+EHG V+ ++ D +TG+ +G F+ YAT E D A+ A
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTAL-A 263
Query: 175 LHNQLTLPGGIGPIQVRYADGER 197
+ + + L G ++V A G+R
Sbjct: 264 IMDNVELEG--RTLRVSLAQGKR 284
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+++G + E + F G V +I++++TGQ +G F+++ T A++ ++
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 176 HNQLTLPGGIGPIQVRYAD-------GERERLGAV-EYKLFVGSLNKQAPVNEVEEIF-S 226
N +P ++ +A GER A + +FVG L ++E F S
Sbjct: 178 -NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFAS 236
Query: 227 KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADP 285
K+ ++ ++ D N +S+G GFV++ + A+ +NG+Y +P+ V A P
Sbjct: 237 KFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYC---SSRPMRVGVATP 293
Query: 286 KR----PRQGDSRGPAFGGSG 302
K+ P+Q S+ G G
Sbjct: 294 KKTYGNPQQYSSQAVVLAGGG 314
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI- 172
AKLFVG+ P E + LF + G V +I +R+T +G F+ +T EEA+ A+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 173 ---------RALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
R+L P G P + A E + +++V +L + + +E+
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPV----LRIYVANLAWEVDNSRLEQ 224
Query: 224 IFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNG 267
+FS++G++ ++ D E +SRG GFV S+ AI L+G
Sbjct: 225 VFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + R EED++ +F+ G V+EV L K+ T +++G +++A E A +A+
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR--VE 232
+ N + G D LF+G++ V++ YG VE
Sbjct: 479 MKNPVIRGKRCGTSPSEDND-----------TLFLGNICNTWTKEAVKQKLKDYGVEGVE 527
Query: 233 DVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRG-CDQPLIVRFADPKR 287
++ L+ D + SRG F+++S A+ A L + G ++ V FA+P R
Sbjct: 528 NITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIR 585
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG + E+ + F ++G V++ +I DR++G+ +G F+ Y T EEA AI+A
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 175 LHNQ 178
L Q
Sbjct: 105 LDGQ 108
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 206 KLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAING 264
KLFVG ++ + + FSKYG+V D ++ D E+ +S+G GFV Y+ + A +AI
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 265 LNG--IYTMRGCDQPLIVRFADPKRPRQG 291
L+G +Y R + V FA+ +RPR G
Sbjct: 105 LDGQDLYGRR-----VGVNFAN-ERPRDG 127
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG + E+ + F ++G V++ +I DR++G+ +G F+ Y T EEA AI+A
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 175 LHNQ 178
L Q
Sbjct: 105 LDGQ 108
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 206 KLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAING 264
KLFVG ++ + + FSKYG+V D ++ D E+ +S+G GFV Y+ + A +AI
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 265 LNG--IYTMRGCDQPLIVRFADPKRPRQG 291
L+G +Y R + V FA+ +RPR G
Sbjct: 105 LDGQDLYGRR-----VGVNFAN-ERPRDG 127
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + R EED++ +F+ G V+EV L K+ T +++G +++A E A +A+
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR--VE 232
+ N + G D LF+G++ V++ YG VE
Sbjct: 479 MKNPVIRGKRCGTSPSEDND-----------TLFLGNICNTWTKEAVKQKLKDYGVEGVE 527
Query: 233 DVYLMRDENKQ--SRGCGFVKYSNRDMALAAINGLNGIYTMRG-CDQPLIVRFADPKR 287
++ L+ D + SRG F+++S A+ A L + G ++ V FA+P R
Sbjct: 528 NITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIR 585
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 22/202 (10%)
Query: 105 SDRSDGG---NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIK 161
SDR G + L++ ++ E +R F G +I +A+ KD G +G F+
Sbjct: 177 SDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVN 235
Query: 162 YATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERL-----------GAVEYK---L 207
+ E+A +A+ + N L L I + ERE++ ++YK +
Sbjct: 236 FDNPEDAKRAMETM-NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNI 294
Query: 208 FVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+V +++ + + FS G + +MRD+ S+G GFV +S + A A+N +G
Sbjct: 295 YVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHG 354
Query: 268 IYTMRGCDQPLIVRFADPKRPR 289
+ G +PL V A K R
Sbjct: 355 -FMFHG--KPLYVSLAQRKEDR 373
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+FV ++ + + +F++ GN++ ++ + G+ +G F+++ T E A+ AI L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERL 158
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGA---VEY-KLFVGSLNKQAPVNEVEEIFSKYGRV 231
+ L G I V + +R+ + Y L++ +L+ + E FS +G++
Sbjct: 159 NGYLV---GDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKI 215
Query: 232 EDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ + +D N S+G GFV + N + A A+ +NG+
Sbjct: 216 ISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGL 252
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
A L+VG + + + F + + V + +D +G+ ++ + + +A +AI
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 174 ALHNQLTLPGGIGPIQVRYA----DGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG 229
+ N TL G I+V ++ D + +G V FV +L + + +E++F K+G
Sbjct: 70 -VKNHSTLNGK--AIRVMWSRRDPDARKSCIGNV----FVKNLAESIDNSGLEDMFKKFG 122
Query: 230 RVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFA 283
+ ++ E+ +S+G GFV++ + A AAI LNG + G Q + +F
Sbjct: 123 NILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGY--LVGDKQIYVGKFV 174
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
A L+VG + + + F E +I + KD TG+ ++ ++ +EA +AI
Sbjct: 15 ATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE 74
Query: 174 ALHNQLTLPGGIGPIQ--VRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRV 231
L N +L G + + R AD + G V K S++ + ++F KYG +
Sbjct: 75 -LKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVG----LHDLFQKYGNI 129
Query: 232 EDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ R E+ +S+G G++++ + + A AI +NG
Sbjct: 130 LSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNG 165
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F L+V ++ E+ + F G ++ +A+ KD + GQ +G F+ Y + ++A +A+
Sbjct: 193 FTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAM 251
Query: 173 RALHNQLTLPGGIGPIQVRYADGERER------------LGAVEYKLFVGSLNKQAPVNE 220
A+ G + V A + ER L + ++V +++ E
Sbjct: 252 EAMDGS---QFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEE 308
Query: 221 VEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIV 280
+ + FS G V +MRD+ S+G GFV +S A +++ NG G +PL V
Sbjct: 309 LRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGC-MFHG--KPLYV 365
Query: 281 RFADPKRPRQ 290
FA K R+
Sbjct: 366 DFAQKKEDRK 375
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+FV ++ + + LF+++GN++ + I + G+ +G +I++ + E A+ AI+ +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILS-SKIARSEDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 176 HNQLTLPGGIGPIQ-VRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
+ I + +R ++ L A L+V +L+ + E FS +G++ +
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 235 YLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ +DEN QS+G GFV Y + D A A+ ++G
Sbjct: 224 AIKKDENGQSKGFGFVNYDSPDDARRAMEAMDG 256
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 105 SDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVA-LIKDRKTGQHQGCCFIKYA 163
S R D G +FVG + + ++ F N ++ A ++ DR TG+ +G F+++A
Sbjct: 146 SSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFA 205
Query: 164 TSEEADQAIRALHNQL--TLPGGIGPI-----------QVRYA-DGERERLGAVEYKLFV 209
E +A+ + L T P IGP + Y G + +FV
Sbjct: 206 DEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFV 265
Query: 210 GSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
G+L+ + + ++F++YG + V + + CGFV++S+R A AI LNG
Sbjct: 266 GNLDPNVTDDHLRQVFTQYGELVHVKI-----PSGKRCGFVQFSDRSCAEEAIRVLNG 318
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 109 DGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEA 168
D ++VG++ E ++ LF G + LI+ K+ F+ Y A
Sbjct: 41 DSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYG----FVDYFDRSSA 96
Query: 169 DQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKY 228
AI L N + G + Y G+RE + +FVG L+ + + FS Y
Sbjct: 97 AIAIVTL-NGRNIFGQSIKVNWAYTRGQREDTSG-HFHIFVGDLSPEVTDATLYACFSAY 154
Query: 229 GRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
D +M D+ +SRG GFV + N+ A +AIN L G +
Sbjct: 155 SSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKW 196
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVG + + A E D+R +F + G + EV + + +T +++G +++ T E +A+
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--RVE 232
L N + G D + L++ ++ K ++E YG +
Sbjct: 255 LKNPVINGKQCGITITTCQDSD---------TLYLDNICKSWKKEALKEKLKHYGVESFK 305
Query: 233 DVYLMRDENKQSR--GCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFAD 284
D+ L+ D+N + GC F+++S+ + A L + G D+P V FA+
Sbjct: 306 DLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVSFAN 359
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLF+G V + E +R F +G V++ +I DR+TG+ +G FI + + EEA AI+A
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 175 LHNQLTLPGGIGPIQVRYADGERERL 200
L Q L G ++V YA+ ER R+
Sbjct: 103 LDGQ-DLHG--RRVRVNYAN-ERPRV 124
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 109 DGGNF--AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSE 166
+GGN K+FVG +P T EE R FE +G+V +V ++ D+ TG+ +G FI + T E
Sbjct: 105 NGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE 164
Query: 167 EADQAIRALHNQL 179
D+ + + L
Sbjct: 165 AVDRVLHKTFHDL 177
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 109 DGGNF--AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSE 166
+GGN K+FVG +P T EE R FE +G+V +V ++ D+ TG+ +G FI + T E
Sbjct: 105 NGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE 164
Query: 167 EADQAIRALHNQL 179
D+ + + L
Sbjct: 165 AVDRVLHKTFHDL 177
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
AKL+VG + + + +R F +G+V++ +I DR+ G+ +G F+ +ATSEEA A++
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 174 ALHNQLTLPGGIGPIQVRYA 193
A+ NQ L G ++V YA
Sbjct: 100 AMDNQ-ELHG--RTVRVNYA 116
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Query: 108 SDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEE 167
S+G N L++G + E + F G + V +I+++ +G +G F ++ +
Sbjct: 92 SNGEN-KTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHAT 150
Query: 168 ADQAIRALHNQLTLPGGIGPIQVRYAD---GERERLGAVEYKLFVGSLNKQAPVNEVEEI 224
A++ ++ + + +P ++ +A G++ + +FVG L + + E
Sbjct: 151 AEKVLQN-YAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHET 209
Query: 225 FSK-YGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRF 282
FS Y V+ ++ D N +S+G GFV++ + A+ +NG+Y +P+ +
Sbjct: 210 FSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYC---SSRPMRIGA 266
Query: 283 ADPKR 287
A P++
Sbjct: 267 ATPRK 271
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 109 DGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEA 168
D KL+VG++PRT +++ + +EHG V + ++ D+ + + + F+ T E+A
Sbjct: 55 DSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDA 114
Query: 169 DQAIRALHNQ---------------LTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLN 213
+ A L+ LT G P+Q GE + + YK++VG+L
Sbjct: 115 NAAAEKLNGTEIGGREIKVNITEKPLTTEG--LPVQA----GESTFVDS-PYKVYVGNLA 167
Query: 214 KQAPVNEVEEIFSKYGRVEDVYLMRDE-NKQSRGCGFVKYSNRDMALAAINGLN 266
K + +++ FS+ G + R +S G GFV +S+ + AAI+ N
Sbjct: 168 KNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFN 221
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
++++VG +P A ED++ E G V++V + K + +++G F+ Y + E A +AI+
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
L+N G I + + +LF+G++ + +++++ S G V
Sbjct: 410 ELNNTEFKAGKIKCSK-----------SQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVT 458
Query: 233 DVYLMRDENKQS--RGCGFVKYSNRDMA 258
V L++D S RG F+ Y N A
Sbjct: 459 AVELIKDMKNISNNRGYAFIDYHNNQCA 486
>Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45043643-45036753 | 20130731
Length = 969
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFVG++ A + +++ LFE++G++ + +H+G I Y A A++AL
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTL-----YTACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N+ TL I+ G L + L+ +E++ IF YG ++++Y
Sbjct: 327 QNR-TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIY 385
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
E + ++++ + A A++ LNGI
Sbjct: 386 ----EYPEMNHIKYIEFYDVRGAEASLRSLNGI 414
>Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45036736 | 20130731
Length = 969
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFVG++ A + +++ LFE++G++ + +H+G I Y A A++AL
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTL-----YTACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N+ TL I+ G L + L+ +E++ IF YG ++++Y
Sbjct: 327 QNR-TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIY 385
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
E + ++++ + A A++ LNGI
Sbjct: 386 ----EYPEMNHIKYIEFYDVRGAEASLRSLNGI 414
>Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45037623 | 20130731
Length = 923
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFVG++ A + +++ LFE++G++ + +H+G I Y A A++AL
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTL-----YTACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N+ TL I+ G L + L+ +E++ IF YG ++++Y
Sbjct: 327 QNR-TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIY 385
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
E + ++++ + A A++ LNGI
Sbjct: 386 ----EYPEMNHIKYIEFYDVRGAEASLRSLNGI 414
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 93 GRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTG 152
GR+GP ++S L V ++ +D+ PLF+++G V+++ + KDR+TG
Sbjct: 5 GRSGPPDISDTYS----------LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTG 54
Query: 153 QHQGCCFIKYATSEEADQAIRALHNQLT 180
+ +G F++Y ++EA +A+ L ++
Sbjct: 55 ESRGFAFVRYKYADEASKAVDRLDGRMV 82
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 93 GRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTG 152
GR+GP ++S L V ++ +D+ PLF+++G V+++ + KDR+TG
Sbjct: 5 GRSGPPDISDTYS----------LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTG 54
Query: 153 QHQGCCFIKYATSEEADQAIRALHNQLT 180
+ +G F++Y ++EA +A+ L ++
Sbjct: 55 ESRGFAFVRYKYADEASKAVDRLDGRMV 82
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 93 GRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTG 152
GR+GP ++S L V ++ +D+ PLF+++G V+++ + KDR+TG
Sbjct: 5 GRSGPPDISDTYS----------LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTG 54
Query: 153 QHQGCCFIKYATSEEADQAIRALHNQLT 180
+ +G F++Y ++EA +A+ L ++
Sbjct: 55 ESRGFAFVRYKYADEASKAVDRLDGRMV 82
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 93 GRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTG 152
GR+GP ++S L V ++ +D+ PLF+++G V+++ + KDR+TG
Sbjct: 5 GRSGPPDISDTYS----------LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTG 54
Query: 153 QHQGCCFIKYATSEEADQAIRALHNQLT 180
+ +G F++Y ++EA +A+ L ++
Sbjct: 55 ESRGFAFVRYKYADEASKAVDRLDGRMV 82
>Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044605-45036753 | 20130731
Length = 923
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFVG++ A + +++ LFE++G++ + +H+G I Y A A++AL
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTL-----YTACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N+ TL I+ G L + L+ +E++ IF YG ++++Y
Sbjct: 327 QNR-TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIY 385
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
E + ++++ + A A++ LNGI
Sbjct: 386 ----EYPEMNHIKYIEFYDVRGAEASLRSLNGI 414
>Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044593-45036753 | 20130731
Length = 923
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFVG++ A + +++ LFE++G++ + +H+G I Y A A++AL
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTL-----YTACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N+ TL I+ G L + L+ +E++ IF YG ++++Y
Sbjct: 327 QNR-TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIY 385
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
E + ++++ + A A++ LNGI
Sbjct: 386 ----EYPEMNHIKYIEFYDVRGAEASLRSLNGI 414
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
++++VG +P A ED++ E G V++V ++K + +++G F+ Y E A +AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--LFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N G + + + K LF+G++ + +++++ + G
Sbjct: 170 ELNNT-------------EFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 231 VEDVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPK 286
V V L++D S RG F+ Y N A + G + P V +ADPK
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSP-TVSWADPK 273
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
++++VG +P A ED++ E G V++V ++K + +++G F+ Y E A +AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--LFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N G + + + K LF+G++ + +++++ + G
Sbjct: 170 ELNNT-------------EFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 231 VEDVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPK 286
V V L++D S RG F+ Y N A + G + P V +ADPK
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSP-TVSWADPK 273
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
++++VG +P A ED++ E G V++V ++K + +++G F+ Y E A +AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--LFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N G + + + K LF+G++ + +++++ + G
Sbjct: 170 ELNNT-------------EFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 231 VEDVYLMRDENKQS--RGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPK 286
V V L++D S RG F+ Y N A + G + P V +ADPK
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSP-TVSWADPK 273
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFV + E +R +F +G++ E +I D+ TG+ +G F+ Y D A+ A
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY---RHVDGAVLA 133
Query: 175 LHN-QLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
L + G + Q+ A + + K+FVG++ + + FSKYG +E+
Sbjct: 134 LKEPSKKIDGRMTVTQLAAAGSTGGDVSS--RKVFVGNVPFEVSAESLLSEFSKYGEIEE 191
Query: 234 VYLMRDE-NKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCD-QPLIVRFA-DPKRPR 289
L D+ + ++RG F Y + A ++ +M+ D +I +FA D K+P+
Sbjct: 192 GPLGFDKASGKTRGFAFFVYKTEEGAKNSVAE-----SMKTVDGHQVICKFAVDNKKPK 245
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++VG+V E ++ +F G V L + K+ FI Y A AI L
Sbjct: 64 VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYG----FIHYFDRRSAALAILTL 119
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N L G + YA G+RE Y +FVG L+ + + FS Y D
Sbjct: 120 -NGRHLFGQPIKVNWAYASGQREDTSG-HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 177
Query: 236 LMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
+M D+ +SRG GFV + ++ A +AIN L G +
Sbjct: 178 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKW 212
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P E ++ ++G + + ++K+R TG+ +G ++ +A+ ++A + +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L + ++V E ++FV + F KYG + D+
Sbjct: 65 EH---VLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 235 YLMRDE-NKQSRGCGFVKYSN 254
Y+ +D+ +K RG GF+ + N
Sbjct: 122 YMPKDQGSKMHRGIGFITFGN 142
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P E ++ ++G + + ++K+R TG+ +G ++ +A+ ++A + +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L + ++V E ++FV + F KYG + D+
Sbjct: 65 EH---VLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 235 YLMRDE-NKQSRGCGFVKYSN 254
Y+ +D+ +K RG GF+ + N
Sbjct: 122 YMPKDQGSKMHRGIGFITFGN 142
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P E ++ ++G + + ++K+R TG+ +G ++ +A+ ++A + +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L + ++V E ++FV + F KYG + D+
Sbjct: 65 EH---VLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 235 YLMRDE-NKQSRGCGFVKYSN 254
Y+ +D+ +K RG GF+ + N
Sbjct: 122 YMPKDQGSKMHRGIGFITFGN 142
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P E ++ ++G + + ++K+R TG+ +G ++ +A+ ++A + +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L + ++V E ++FV + F KYG + D+
Sbjct: 65 EH---VLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 235 YLMRDE-NKQSRGCGFVKYSN 254
Y+ +D+ +K RG GF+ + N
Sbjct: 122 YMPKDQGSKMHRGIGFITFGN 142
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+LFVG++P + + +FE G+V V +I D+ TG+ +G F+ +++ E + A +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 175 LHNQLT----LPGGIGP------IQVRYADGERERLGAV-------------EYKLFVGS 211
L+ + L GP R+ GE R G + ++ VG+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRF--GENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNG 267
L +E +F + G+V + ++ D E+ +SRG GFV +S+ D +AI L+G
Sbjct: 203 LAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+LFVG++P + + +FE G+V V +I D+ TG+ +G F+ +++ E + A +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 175 LHNQLT----LPGGIGP------IQVRYADGERERLGAV-------------EYKLFVGS 211
L+ + L GP R+ GE R G + ++ VG+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRF--GENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNG 267
L +E +F + G+V + ++ D E+ +SRG GFV +S+ D +AI L+G
Sbjct: 203 LAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
++++VG +P A ED++ E G V++V ++K + +++G F+ Y E A +AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--LFVGSLNKQAPVNEVEEIFSKYG-R 230
L+N G + + + K LF+G++ + +++++ + G
Sbjct: 170 ELNNT-------------EFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 231 VEDVYLMRDENKQS--RGCGFVKYSNRDMA 258
V V L++D S RG F+ Y N A
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCA 246